Comparison_2Hamlet + Amoxicillin 1...1 Comparison_2Hamlet + Amoxicillin 1...2 Comparison_2Hamlet + Amoxicillin 1...3 Comparison_2Hamlet + Amoxicillin 1...4 Comparison_2Hamlet + Amoxicillin 1...5 Comparison_2Hamlet + Amoxicillin 1...6 1 Coefficients Standard Errors Test Statistics W p Values Adjusted p Values Differential Abundance Lachnospiraceae_[G-11] bacterium_MOT-178 (SP1) -0.690717073832215 2.6774617569855 -0.257974580600501 0.796426525127615 1 FALSE Alistipes sp._MOT-127 (SP10) 0.962120497450733 0.682691026815995 1.40930590802983 0.158744732612238 1 FALSE Turicimonas muris (SP11) 1.92325740973237 2.13375594031485 0.901348356386339 0.367403130626901 1 FALSE Bacteroides acidofaciens (SP19) 1.87015432764968 1.99609063544906 0.93690852230713 0.348805615037389 1 FALSE Bacteroides caecimuris (SP2) 1.43500985676935 1.12962948412787 1.27033675814264 0.203964699963688 1 FALSE Blautia caecimuris (SP20) 1.01784886265127 3.18844176716754 0.319230814604302 0.749551491752848 1 FALSE Peptococcaceae_[G-1] bacterium_MOT-146 (SP21) 2.23724330183651 1.18197615536698 1.8927990143269 0 0 TRUE Prevotella sp._MOT-128 (SP22) 0.727778855698638 2.30294584282911 0.316020829566961 0.751986698004232 1 FALSE Acutalibacter muris (SP24) -0.86798699402483 1.4579193539854 -0.595360087409556 0 0 TRUE Roseburia faecis (SP27) 2.86055138252897 1.39520913672863 2.05026709417641 0 0 TRUE Flavonifractor plautii (SP28) 2.58102998905615 1.92672424335508 1.33959490983603 0 0 TRUE Oscillospiraceae_[G-2] bacterium_MOT-149 (SP29) 1.07982406125051 2.11599267743339 0.510315594551251 0.609830379174706 1 FALSE Lachnospiraceae_[G-14] bacterium_MOT-183 (SP3) 0.483505215213193 2.37324115801595 0.20373202006045 0.838562918552077 1 FALSE Robinsoniella peoriensis (SP30) 3.1366587021717 2.37088708622004 1.322989492162 0 0 TRUE Lachnospiraceae_[G-9] bacterium_MOT-174 (SP31) -1.29680487358672 1.78286688571005 -0.727370553562248 0 0 TRUE Erysipelatoclostridium [Clostridium] cocleatum (SP33) 2.79268506411522 1.5760712760146 1.77192815237206 0 0 TRUE Eubacteriales_[G-1] bacterium_MOT-159 (SP37) 2.65132829880216 1.24169554015754 2.13524830609101 0 0 TRUE Bacteroides stercorirosoris (SP4) 2.77747825482014 1.56706100528076 1.77241233459352 0.0763261357680247 1 FALSE Eubacteriales_[G-3] bacterium_MOT-163 (SP40) -0.33639178214242 1.07969053941459 -0.311563146903938 0 0 TRUE Lachnospiraceae_[G-2] bacterium_MOT-167 (SP42) 2.67837014707295 1.2612629550693 2.12356205048913 0 0 TRUE Muribaculum intestinale (SP5) 0.740802884321996 1.74987552461714 0.423346045990374 0.672042803631875 1 FALSE Lachnospiraceae_[G-14] bacterium_MOT-184 (SP6) -1.07977335790258 2.1348070355918 -0.505794359818215 0.613001018391116 1 FALSE Parabacteroides goldsteinii (SP8) 2.72034158026102 1.8651836765236 1.45848455275531 0.144707029902432 1 FALSE Akkermansia muciniphila (SP9) -1.89364451631776 2.62355817291679 -0.721784840094652 0.470426771402792 1 FALSE Parabacteroides goldsteinii_nov_97.614% (SPN10) 2.46420233115922 1.83396297773265 1.34364889644923 0 0 TRUE Anaerotruncus rubiinfantis_nov_92.760% (SPN103) 3.11453703883785 1.76885837838875 1.76076110834542 0.0782788449898232 1 FALSE Muribaculaceae_[G-2] bacterium_MOT-104_nov_91.991% (SPN104) -2.46267786739329 1.68933579292344 -1.45777877773581 0 0 TRUE Mediterraneibacter [Ruminococcus] gnavus_nov_93.424% (SPN105) 1.04171418773447 2.1951657549338 0.474549215881827 0.635108310703851 1 FALSE Alistipes putredinis_nov_95.887% (SPN106) -0.659525301205121 1.30509336224997 -0.505347219043474 0 0 TRUE Oscillibacter valericigenes_nov_95.260% (SPN107) 0.672208861687552 2.16374114426046 0.310669722887441 0.756051716674158 1 FALSE Pseudobutyrivibrio ruminis_nov_91.176% (SPN109) -0.860523995727004 1.45237604005468 -0.592493935451182 0 0 TRUE Muribaculaceae_[G-1] bacterium_MOT-129_nov_91.522% (SPN110) 2.48802198581993 1.35491570132378 1.8362928286897 0 0 TRUE Saccharofermentans acetigenes_nov_88.764% (SPN111) -1.04568790809349 1.79649636594593 -0.582070706022772 0.560519055923166 1 FALSE Lacrimispora indolis_nov_90.724% (SPN112) 1.24976526441122 1.89615352676236 0.659105524300642 0.509828008484461 1 FALSE Kineothrix alysoides_nov_93.651% (SPN113) -1.13181097171514 1.8859420891574 -0.600130289377449 0 0 TRUE Muribaculaceae_[G-2] bacterium_MOT-104_nov_90.870% (SPN116) 0.887814528938299 2.07709995117513 0.427429854030863 0.669066266702313 1 FALSE Muribaculaceae_[G-2] bacterium_MOT-104_nov_93.043% (SPN117) -0.826101904375433 1.42687107995715 -0.578960437266865 0 0 TRUE Muribaculaceae_[G-2] bacterium_MOT-104_nov_91.106% (SPN118) -1.17611234025519 1.69032304298307 -0.695791461364451 0 0 TRUE Alistipes putredinis_nov_95.879% (SPN119) 2.30339361474445 1.22655113733058 1.87794340133056 0 0 TRUE Oscillospiraceae_[G-2] bacterium_MOT-149_nov_95.506% (SPN121) -0.626147288312596 1.21074904998498 -0.517156951987997 0.605046599790446 1 FALSE Ruthenibacterium lactatiformans_nov_97.045% (SPN122) -0.400300505472504 2.0264589669094 -0.197536941043031 0.843407376135747 1 FALSE Lachnospiraceae_[G-11] bacterium_MOT-178_nov_97.978% (SPN124) 0.878163286458502 1.9606701578112 0.447889351995261 0.654233053441553 1 FALSE Lachnospiraceae_[G-9] bacterium_MOT-174_nov_96.388% (SPN125) 3.29557676612352 1.95653603228599 1.68439359753217 0 0 TRUE Lachnospiraceae_[G-14] bacterium_MOT-185_nov_96.599% (SPN126) -2.76743890146318 1.38479757217747 -1.99844291834772 0 0 TRUE Enterocloster asparagiformis_nov_94.344% (SPN129) 1.44022082068326 1.71260362103847 0.840953973815584 0.400373719545303 1 FALSE Prevotellamassilia timonensis_nov_94.168% (SPN13) 0.139998439402623 0.724212443185294 0.193311286929661 0.846715187356869 1 FALSE Eisenbergiella massiliensis_nov_96.599% (SPN130) 2.87164297882393 1.63477383350154 1.75659954910895 0 0 TRUE Neglectibacter timonensis_nov_97.500% (SPN131) -0.673040666003238 1.31486060056782 -0.511872259091637 0 0 TRUE Mailhella massiliensis_nov_92.094% (SPN132) 1.17832149366784 1.80830049707921 0.65161818822208 0.514647511451901 1 FALSE Anaerotruncus rubiinfantis_nov_92.517% (SPN133) 1.36326365794464 1.48911160607763 0.915487900558048 0.359935551505577 1 FALSE Neglectibacter timonensis_nov_97.727% (SPN134) 2.62445172066879 1.45275828343128 1.8065302057477 0 0 TRUE Eubacterium coprostanoligenes_nov_95.701% (SPN137) 2.92319965397841 1.44199557538387 2.02719044626765 0 0 TRUE Lachnospiraceae_[G-14] bacterium_MOT-184_nov_95.405% (SPN138) -0.977143768194894 1.76840516022262 -0.552556501289492 0 0 TRUE Oscillospiraceae_[G-2] bacterium_MOT-149_nov_95.056% (SPN14) 1.03223012098867 1.9665017221159 0.5249067973752 0.599647983867626 1 FALSE Lachnospiraceae_[G-14] bacterium_MOT-183_nov_95.425% (SPN140) 0.735878831406697 1.80390055243416 0.407937583041211 0.68331949974628 1 FALSE Oscillospiraceae_[G-2] bacterium_MOT-149_nov_95.281% (SPN141) 0.604844857964852 1.85724020111433 0.325668622508791 0.744675086674176 1 FALSE Petrocella atlantisensis_nov_87.810% (SPN142) -0.891331077569949 1.66437452393093 -0.535535160358496 0.592279851224225 1 FALSE Oscillospiraceae_[G-3] bacterium_MOT-150_nov_96.396% (SPN143) 1.08450151020468 1.76327376237026 0.615049990165372 0.538521707239342 1 FALSE Lachnospiraceae_[G-6] bacterium_MOT-171_nov_95.238% (SPN144) 3.53142285575352 2.31757182820937 1.52375983034019 0.127568717472867 1 FALSE Eubacteriales_[G-2] bacterium_MOT-162_nov_95.260% (SPN147) -0.504233889237213 1.19461136708023 -0.422090315840221 0 0 TRUE Anaerosporobacter mobilis_nov_95.000% (SPN148) -1.08904779131083 1.62403400904083 -0.67058188760101 0 0 TRUE Ruminococcus albus_nov_92.500% (SPN149) -0.558223665218898 1.45801291052161 -0.382866064621602 0 0 TRUE Alistipes putredinis_nov_96.529% (SPN150) -1.13614516719397 1.26090604681603 -0.901054579017129 0.367559301201511 1 FALSE Lawsonibacter asaccharolyticus_nov_97.297% (SPN151) 3.02831085523917 1.5211737042621 1.99077255066552 0 0 TRUE Rhodospirillum rubrum_nov_88.036% (SPN154) 0.231857581937055 0.757781217943353 0.305969027005347 0 0 TRUE Lawsonibacter asaccharolyticus_nov_95.730% (SPN155) 3.06824458851005 1.78278428256744 1.72104085643575 0 0 TRUE Eubacteriales_[G-3] bacterium_MOT-163_nov_95.023% (SPN156) 2.69111055134635 1.27051307334132 2.11812897309982 0 0 TRUE Anaerotignum lactatifermentans_nov_97.523% (SPN157) -0.507522281826143 2.06343172153329 -0.245960298336897 0.805712965858549 1 FALSE Phocea massiliensis_nov_95.682% (SPN158) 1.08413909033982 2.21544398904557 0.489355224370566 0.624590230073806 1 FALSE Oscillospiraceae_[G-2] bacterium_MOT-149_nov_96.171% (SPN159) 2.73950455462784 1.53681355801557 1.78258744552284 0 0 TRUE Lachnospiraceae_[G-6] bacterium_MOT-171_nov_96.606% (SPN161) 1.02757174227776 1.52012078137101 0.675980326609958 0.499053135880641 1 FALSE Muribaculum intestinale_nov_93.737% (SPN162) 0.921348914868133 1.91675870788111 0.480680698660628 0.630743451102668 1 FALSE Clostridiales_[F-1][G-1] bacterium_HMT_093_nov_90.337% (SPN163) -2.45943256498022 1.25911962426283 -1.95329539591612 0 0 TRUE Falcatimonas natans_nov_92.955% (SPN164) 2.83040642738192 1.60405661312335 1.76453025674117 0 0 TRUE Butyricicoccus pullicaecorum_nov_94.382% (SPN166) 5.00690941026442 1.35572625615198 3.69315662918247 0 0 TRUE Oscillospiraceae_[G-2] bacterium_MOT-149_nov_96.396% (SPN168) 1.0226303922733 2.07047225441584 0.493911661985454 0.621368568112118 1 FALSE Lachnoclostridium [Clostridium] populeti_nov_94.331% (SPN172) 3.21267789087725 1.66175906209344 1.93329945607759 0 0 TRUE Oscillospiraceae_[G-2] bacterium_MOT-149_nov_95.270% (SPN178) -0.884777113821147 1.47040778361244 -0.601722273019705 0 0 TRUE Eubacteriales_[G-4] bacterium_MOT-165_nov_97.059% (SPN179) -0.744316926016458 1.36671704698751 -0.544602064968068 0 0 TRUE Lachnospiraceae_[G-10] bacterium_MOT-175_nov_90.693% (SPN18) -0.376325515413294 1.10652700974219 -0.3400960953506 0 0 TRUE Lachnospiraceae_[G-14] bacterium_MOT-184_nov_95.238% (SPN184) 3.22170487707814 1.89981419306051 1.69579998341213 0 0 TRUE Neglectibacter timonensis_nov_97.959% (SPN188) 2.8358487251444 1.37685355612474 2.05965893215696 0 0 TRUE Harryflintia acetispora_nov_93.468% (SPN190) -0.727875237162291 1.35470536637132 -0.537294126996749 0 0 TRUE Gracilibacter thermotolerans_nov_88.315% (SPN192) 2.2755997450981 0.982292492980624 2.31662133362449 0 0 TRUE Lachnospiraceae_[G-11] bacterium_MOT-176_nov_97.297% (SPN193) 0.75574279553092 2.78864353353367 0.271007314647086 0.786385406443428 1 FALSE Paludicola psychrotolerans_nov_94.533% (SPN196) 2.52428960576953 1.15111408399491 2.19291001723223 0 0 TRUE Anaerostipes butyraticus_nov_97.285% (SPN199) -0.776572776661457 1.61808958010406 -0.47993188152878 0 0 TRUE Acetatifactor muris_nov_92.551% (SPN2) -1.41272716798304 2.10215767522098 -0.672036729040574 0 0 TRUE Alistipes sp._MOT-127_nov_91.775% (SPN200) 2.67619858673255 2.00248113151643 1.33644134998961 0 0 TRUE Eubacteriales_[G-1] bacterium_MOT-160_nov_95.270% (SPN209) 2.70338187572058 1.27944089848126 2.11294001851089 0 0 TRUE Christensenella hongkongensis_nov_86.353% (SPN21) 2.69318740126322 1.27202280621023 2.11724773181317 0 0 TRUE Blautia caecimuris_nov_96.825% (SPN211) -0.702595878365123 1.94368947089449 -0.361475373965877 0 0 TRUE Muribaculum intestinale_nov_92.688% (SPN212) 0.266977753822997 1.20572314450606 0.221425420121937 0 0 TRUE Faecalicatena orotica_nov_97.959% (SPN213) -0.670825818430348 1.54002700429571 -0.43559354255423 0 0 TRUE Algimonas porphyrae_nov_83.596% (SPN215) 2.76382088784323 1.32366075425452 2.08801301916654 0 0 TRUE Duncaniella freteri_nov_90.456% (SPN216) 1.18685694378723 2.05068615193207 0.578760890675066 0.56275052354822 1 FALSE Frisingicoccus caecimuris_nov_96.154% (SPN220) 2.65132829880216 1.47227831489786 1.80083362770041 0 0 TRUE Peptostreptococcaceae_[XI][G-2] bacterium_HMT_091_nov_93.002% (SPN23) 0.0179062865462568 0.861791478742615 0.020777980506819 0 0 TRUE Harryflintia acetispora_nov_92.517% (SPN24) 2.33516367467923 1.02145857064332 2.28610708431232 0 0 TRUE Peptococcus sp._HMT_168_nov_89.979% (SPN25) 2.18450196676487 0.924363679843991 2.36324945949149 0 0 TRUE Parabacteroides goldsteinii_nov_93.074% (SPN27) 0.144402827114558 0.796848905395024 0.181217325062363 0 0 TRUE Coprococcus catus_nov_94.570% (SPN32) -0.882429686279342 1.46866036226966 -0.600839859881315 0 0 TRUE Bilophila wadsworthia_nov_91.684% (SPN4) -0.330275402586354 1.65403709023805 -0.199678353366804 0 0 TRUE Duncaniella freteri_nov_93.103% (SPN49) 0.389977893475286 2.78076148759797 0.14024140337622 0.888469259965027 1 FALSE Oscillibacter valericigenes_nov_95.475% (SPN5) 2.51381754035841 1.14375730360842 2.1978592245292 0 0 TRUE Eubacterium ventriosum_nov_96.825% (SPN53) 2.52083534342435 1.14868539697836 2.19453938393876 0 0 TRUE Oscillospiraceae_[G-1] bacterium_MOT-147_nov_95.937% (SPN6) 1.24724529099735 1.1915363441321 1.04675387967778 0.295213106646637 1 FALSE Muribaculaceae_[G-2] bacterium_MOT-104_nov_93.074% (SPN60) 4.65526470143403 1.82157407163083 2.55562745096949 0.0105996535780837 1 FALSE Lacrimispora xylanolytica_nov_97.285% (SPN72) -1.14190398191152 1.36336306159602 -0.837564119255766 0.402275551579199 1 FALSE Hydrogenoanaerobacterium saccharovorans_nov_93.636% (SPN74) -0.805980854466403 1.63995659977965 -0.49146474642969 0 0 TRUE Culturomica massiliensis_nov_93.709% (SPN78) 1.26430907097079 1.90614284478848 0.663281387555762 0.507150354720263 1 FALSE Kineothrix alysoides_nov_95.928% (SPN79) -1.36086188302194 3.01281983324191 -0.451690429015 0.651492014163176 1 FALSE Gracilibacter thermotolerans_nov_87.668% (SPN8) 0.0549814982496651 0.841847155838798 0.065310547013588 0 0 TRUE Lachnospiraceae_[G-10] bacterium_MOT-175_nov_96.372% (SPN80) -1.22096279438486 1.41907919691516 -0.86039087673121 0.389573613200823 1 FALSE Muribaculaceae_[G-2] bacterium_MOT-104_nov_92.191% (SPN82) 1.07885628741674 2.03261681173973 0.530772096927279 0.595576718193083 1 FALSE Lachnospiraceae_[G-10] bacterium_MOT-175_nov_92.174% (SPN83) 4.89166209168179 1.34602795520219 3.6341459869212 0 0 TRUE Lachnoclostridium pacaense_nov_96.825% (SPN84) 3.09097328668238 1.56873322378794 1.97036260838459 0 0 TRUE Muribaculaceae_[G-2] bacterium_MOT-104_nov_89.462% (SPN85) -3.0987273538122 1.92974814867995 -1.60576775572081 0 0 TRUE Eubacterium coprostanoligenes_nov_95.485% (SPN86) -3.01055161376987 1.9126739819244 -1.57400144625842 0 0 TRUE Muribaculaceae_[G-2] bacterium_MOT-104_nov_91.974% (SPN87) -2.76518876469448 1.3729264104657 -2.01408374375763 0 0 TRUE Lachnospiraceae_[G-12] bacterium_MOT-179_nov_92.534% (SPN88) 0.944618262504644 2.42490279372465 0.389548919218205 0.696870130363714 1 FALSE Lachnospiraceae_[G-14] bacterium_MOT-184_nov_94.989% (SPN89) 0.54817808665829 1.64352580854951 0.333537863419428 0.738728313178684 1 FALSE Pseudoflavonifractor capillosus_nov_95.721% (SPN90) 1.12115076520458 1.92455211598692 0.582551522451054 0.56019524781701 1 FALSE Anaerotignum lactatifermentans_nov_95.270% (SPN91) 1.98839333549226 1.89497710856036 1.04929675747 0.294041557923586 1 FALSE Alistipes timonensis_nov_97.831% (SPN94) 2.8358487251444 1.37685355612474 2.05965893215696 0 0 TRUE Oscillospiraceae_[G-2] bacterium_MOT-149_nov_95.946% (SPN95) -4.3621407286662 0.608896567937061 -7.16400938741551 0 0 TRUE Alistipes senegalensis_nov_95.228% (SPN97) -0.354095057247069 1.09154455504323 -0.324398171023852 0 0 TRUE Oscillospiraceae_[G-4] bacterium_MOT-151_nov_91.723% (SPN98) 0.828907548255791 2.03713602672535 0.406898477755676 0.684082554052673 1 FALSE Enterobacter asburiae_cancerogenus_cloacae_hormaechei (SPP2) 3.20785006893772 2.42806249974773 1.32115630024804 0 0 TRUE Bacteroides acidifaciens_acidofaciens (SPP3) -0.860793428585536 2.16141357595181 -0.39825484496019 0.690442341850118 1 FALSE multigenus multispecies_sppn1_2_nov_95.918% (SPPN1) -0.44419183382704 1.37634568101762 -0.322732755261469 0 0 TRUE multigenus multispecies_sppn10_2_nov_95.918% (SPPN10) 0.930829639338089 1.88132427156985 0.494773630152217 0.620759920395331 1 FALSE Alistipes multispecies_sppn12_2_nov_96.304% (SPPN12) -0.841101026352345 2.05255973129276 -0.409781510145187 0 0 TRUE multigenus multispecies_sppn14_2_nov_82.889% (SPPN14) -0.555093751768952 1.45575153005746 -0.381310780244923 0 0 TRUE Eubacteriales_[G-1] multispecies_sppn15_2_nov_97.511% (SPPN15) 1.28284326235761 1.97069052675048 0.650961297547273 0.515071470589266 1 FALSE multigenus multispecies_sppn17_2_nov_95.928% (SPPN17) 1.19355846367577 1.75071114694656 0.681756362697224 0.495393021375156 1 FALSE Bacteroidetes_[G-3] multispecies_sppn2_2_nov_87.554% (SPPN2) 2.66286347519465 1.48067859509613 1.7984074896563 0 0 TRUE multigenus multispecies_sppn20_3_nov_95.455% (SPPN20) 2.87164297882393 1.40346842020223 2.04610444915471 0 0 TRUE Roseburia multispecies_sppn21_3_nov_95.711% (SPPN21) -0.986755618074857 1.54673660900985 -0.637959696775091 0 0 TRUE multigenus multispecies_sppn22_2_nov_95.465% (SPPN22) -0.854174597403439 1.67592781182304 -0.509672666911759 0 0 TRUE Lachnospiraceae_[G-11] multispecies_sppn4_2_nov_96.847% (SPPN4) 1.41399668213783 2.07425383858964 0.681689316819229 0.495435424105852 1 FALSE multigenus multispecies_sppn5_2_nov_97.279% (SPPN5) 5.44217341211928 1.56245900644126 3.48308236547894 0 0 TRUE Bacteroides multispecies_sppn6_2_nov_96.312% (SPPN6) 0.782939057659745 0.812719395561899 0.963357170919289 0.335368311783894 1 FALSE multigenus multispecies_sppn7_2_nov_92.777% (SPPN7) 1.09460995344299 2.47552156707286 0.442173466796855 0.65836368474636 1 FALSE multigenus multispecies_sppn8_3_nov_95.011% (SPPN8) -1.34275632329814 1.81827750488185 -0.738477113473058 0 0 TRUE multigenus multispecies_sppn9_2_nov_93.002% (SPPN9) 0.478216091648513 1.71065879229044 0.279550833751142 0.779822132546249 1 FALSE