Comparison_2Hamlet + Amoxicillin 2...1 Comparison_2Hamlet + Amoxicillin 2...2 Comparison_2Hamlet + Amoxicillin 2...3 Comparison_2Hamlet + Amoxicillin 2...4 Comparison_2Hamlet + Amoxicillin 2...5 Comparison_2Hamlet + Amoxicillin 2...6 1 Coefficients Standard Errors Test Statistics W p Values Adjusted p Values Differential Abundance Lachnospiraceae_[G-11] bacterium_MOT-178 (SP1) -2.03056123763685 1.71584227218854 -1.18341951970148 0 0 TRUE Alistipes sp._MOT-127 (SP10) 5.95575098000227 1.36123183600562 4.3752657133547 1.21284646679588e-05 0.00145541576015506 TRUE Turicimonas muris (SP11) 6.98796581905452 1.38375901145947 5.04998757817244 4.41838794938709e-07 5.34624941875838e-05 TRUE Bacteroides caecimuris (SP2) 2.94614553388751 0.749747127189239 3.92951893651456 8.51159738378844e-05 0.00995856893903248 TRUE Blautia caecimuris (SP20) 5.41637515366166 1.55459379418865 3.48410959435772 0 0 TRUE Peptococcaceae_[G-1] bacterium_MOT-146 (SP21) -0.957283432264208 1.2857952044463 -0.744506923772859 0 0 TRUE Prevotella sp._MOT-128 (SP22) -1.97216418199298 1.73429694759685 -1.13715484809319 0.255473558515127 1 FALSE Lactobacillus taiwanensis (SP23) -3.99093938250492 0.409535313720773 -9.74504334252847 0 0 TRUE Flavonifractor plautii (SP28) 5.38315408626352 1.29405934351215 4.15989739052719 0 0 TRUE Oscillospiraceae_[G-2] bacterium_MOT-149 (SP29) -3.86995320554037 0.448918050281855 -8.62062285780358 0 0 TRUE Robinsoniella peoriensis (SP30) 4.0586639749315 1.81793317058511 2.23257050402199 0 0 TRUE Lachnospiraceae_[G-9] bacterium_MOT-174 (SP31) -2.26541514347437 1.75483126691504 -1.29095895781304 0 0 TRUE Eubacteriales_[G-2] bacterium_MOT-162 (SP35) 0.342312890211366 1.32179133152663 0.258976498064945 0 0 TRUE Lawsonibacter asaccharolyticus (SP36) 0.230488644781988 1.61838787317853 0.14241866773835 0 0 TRUE Bacteroides stercorirosoris (SP4) -0.188834875279994 2.22609598788685 -0.0848278224782425 0.93239827411611 1 FALSE Oscillospiraceae_[G-7] bacterium_MOT-154 (SP43) 1.03313718099928 0.985158626540722 1.04870134937257 0 0 TRUE Clostridium tertium (SP44) 3.86763713576069 1.85693788742654 2.08280371785655 0 0 TRUE Muribaculum intestinale (SP5) 8.14836482960517 0.487590923112367 16.7114776821376 0 0 TRUE Lachnospiraceae_[G-14] bacterium_MOT-184 (SP6) -4.44058673567823 0.484850504937486 -9.15867198333799 0 0 TRUE Parabacteroides goldsteinii (SP8) 6.34334436854702 0.749403906798969 8.46452001517074 2.57209749526607e-17 3.31800576889324e-15 TRUE Akkermansia muciniphila (SP9) 6.16088337493822 1.60431456466749 3.84019662391779 0 0 TRUE Prevotellamassilia timonensis_nov_92.641% (SPN1) 3.58682264178656 1.18961871991973 3.01510272302086 0 0 TRUE Anaerotaenia torta_nov_97.273% (SPN100) 0.0887327329805419 1.78828323338396 0.0496189481196631 0 0 TRUE Oscillospiraceae_[G-3] bacterium_MOT-150_nov_90.745% (SPN101) 0.5900918652393 1.38649051924662 0.425601082047022 0 0 TRUE Kineothrix alysoides_nov_95.227% (SPN102) -2.33536375174433 2.05756986188497 -1.13501067205799 0 0 TRUE Anaerotruncus rubiinfantis_nov_92.760% (SPN103) -1.5329397535016 1.54108349066995 -0.994715576918676 0 0 TRUE Muribaculaceae_[G-2] bacterium_MOT-104_nov_91.991% (SPN104) -0.0420362748630108 1.83712454760451 -0.0228815596187113 0 0 TRUE Alistipes putredinis_nov_95.887% (SPN106) 0.0516575212771333 1.81813731704046 0.0284123321120875 0 0 TRUE Oscillibacter valericigenes_nov_95.260% (SPN107) -0.0330871915176132 1.62274084051387 -0.0203896954409156 0 0 TRUE Kineothrix alysoides_nov_97.279% (SPN108) -1.61334150638449 1.55354193771711 -1.03849240707029 0 0 TRUE Lachnospiraceae_[G-9] bacterium_MOT-174_nov_96.364% (SPN11) 0.141754297857103 1.74561516637145 0.0812059270496392 0 0 TRUE Muribaculaceae_[G-1] bacterium_MOT-129_nov_91.522% (SPN110) 6.10941723148281 1.79037477271279 3.41236780399099 0 0 TRUE Saccharofermentans acetigenes_nov_88.764% (SPN111) -1.57075648206894 1.4895220114886 -1.0545372743429 0 0 TRUE Lacrimispora indolis_nov_90.724% (SPN112) 2.27393490616299 2.37942030112132 0.955667607396384 0.339240192887668 1 FALSE Lawsonibacter asaccharolyticus_nov_97.973% (SPN114) -3.87868766406896 0.470730642987886 -8.23971781282311 0 0 TRUE Muribaculaceae_[G-2] bacterium_MOT-104_nov_90.870% (SPN116) -0.181819323373217 1.94966824414828 -0.0932565445013161 0 0 TRUE Muribaculaceae_[G-2] bacterium_MOT-104_nov_93.043% (SPN117) 6.22759988463225 1.6500097810204 3.77428058685869 0 0 TRUE Muribaculaceae_[G-2] bacterium_MOT-104_nov_91.106% (SPN118) 0.089823841428865 1.5239448102678 0.0589416629943971 0 0 TRUE Alistipes putredinis_nov_95.879% (SPN119) -1.3567886872185 1.45013118556854 -0.935631686788775 0 0 TRUE Odoribacter splanchnicus_nov_93.939% (SPN120) -1.25031666678023 1.52261834806426 -0.821162222542368 0 0 TRUE Oscillospiraceae_[G-2] bacterium_MOT-149_nov_95.506% (SPN121) -4.19230839172631 0.417752985629085 -10.0353762532977 0 0 TRUE Ruthenibacterium lactatiformans_nov_97.045% (SPN122) -3.10916599851821 0.357846111745141 -8.68855604817236 0 0 TRUE Lachnospiraceae_[G-10] bacterium_MOT-175_nov_95.475% (SPN123) 0.15878485157634 1.67583697747537 0.0947495810812979 0 0 TRUE Lachnospiraceae_[G-11] bacterium_MOT-178_nov_97.978% (SPN124) -0.0571413402670233 1.64209915572831 -0.0347977404821694 0 0 TRUE Lachnospiraceae_[G-9] bacterium_MOT-174_nov_96.388% (SPN125) 0.0182963684248054 1.84501302272606 0.009916660857912 0 0 TRUE Muribaculaceae_[G-2] bacterium_MOT-104_nov_90.022% (SPN127) 4.26920462411605 1.98740826706234 2.14812663048168 0 0 TRUE Enterocloster asparagiformis_nov_94.344% (SPN129) 0.344652081097581 1.31992473438731 0.261114950056273 0 0 TRUE Prevotellamassilia timonensis_nov_94.168% (SPN13) 4.15287402800177 2.74248440284955 1.51427443805579 0.129956248962273 1 FALSE Mailhella massiliensis_nov_92.094% (SPN132) -0.784599220541835 1.26109134297316 -0.622158914113277 0.533837379083218 1 FALSE Anaerotruncus rubiinfantis_nov_92.517% (SPN133) 2.10789273883364 1.71086495182879 1.23206261054121 0.217925696853327 1 FALSE Neglectibacter timonensis_nov_97.727% (SPN134) -3.43752090406114 0.451471668406473 -7.61403459976638 0 0 TRUE Butyricicoccus pullicaecorum_nov_94.820% (SPN135) 0.319781793167191 1.33977715860292 0.238682822075164 0 0 TRUE Lachnospiraceae_[G-11] bacterium_MOT-176_nov_95.946% (SPN136) 2.12149225011181 2.15252847770593 0.985581501979848 0.324338518980213 1 FALSE Eubacterium coprostanoligenes_nov_95.701% (SPN137) 0.478635469764488 1.47542711261725 0.324404686393108 0 0 TRUE Lachnospiraceae_[G-14] bacterium_MOT-184_nov_95.405% (SPN138) 0.49665787685458 1.46102762952792 0.339937361085402 0 0 TRUE Acetatifactor muris_nov_96.145% (SPN139) 0.0272334542416917 1.57422871366371 0.0172995537467432 0 0 TRUE Oscillospiraceae_[G-2] bacterium_MOT-149_nov_95.056% (SPN14) -3.95176730379565 0.529530300766229 -7.46277842472367 0 0 TRUE Petrocella atlantisensis_nov_87.810% (SPN142) -0.815905707204328 1.1891012061494 -0.686153292070427 0 0 TRUE Lachnospiraceae_[G-6] bacterium_MOT-171_nov_95.238% (SPN144) 4.31954455974532 1.78131839241216 2.42491436575582 0 0 TRUE Muribaculaceae_[G-2] bacterium_MOT-104_nov_92.208% (SPN146) 2.15006909776098 2.39039711912935 0.899461047938384 0.368407134639517 1 FALSE Eubacteriales_[G-2] bacterium_MOT-162_nov_95.260% (SPN147) 0.429767645033863 1.2521018846105 0.343236960439168 0 0 TRUE Anaerosporobacter mobilis_nov_95.000% (SPN148) 0.035486970801909 1.83116287514105 0.0193794726201925 0 0 TRUE Oscillospiraceae_[G-4] bacterium_MOT-151_nov_92.568% (SPN15) 0.580429352948216 1.13259503183646 0.512477396273824 0 0 TRUE Alistipes putredinis_nov_96.529% (SPN150) 1.95086959761298 0.502819590356043 3.87985996375278 0.0001045166205459 0.0121239279833243 TRUE Clostridium oryzae_nov_88.889% (SPN152) -1.20900722650781 1.58934578223873 -0.760694897245594 0 0 TRUE Rhodospirillum rubrum_nov_88.036% (SPN154) 0.600042852955861 1.117098819048 0.537143932769726 0 0 TRUE Phocea massiliensis_nov_95.682% (SPN158) -2.75893498055558 1.21503675368704 -2.27065969172008 0.0231675869196516 1 FALSE Oscillospiraceae_[G-2] bacterium_MOT-149_nov_96.171% (SPN159) 3.87604599007592 1.42247215090594 2.72486599305818 0 0 TRUE Lachnospiraceae_[G-6] bacterium_MOT-171_nov_95.485% (SPN160) 0.191227632896529 1.70583256699408 0.112102228903684 0 0 TRUE Muribaculum intestinale_nov_93.737% (SPN162) 0.00706132643905155 1.40926807239448 0.00501063394351488 0.996002109265451 1 FALSE Falcatimonas natans_nov_92.955% (SPN164) 3.58398574523059 1.18734177248665 3.01849545621954 0 0 TRUE Kineothrix alysoides_nov_95.465% (SPN167) 0.211065675407331 1.63394137813065 0.129175794329174 0 0 TRUE Duncaniella freteri_nov_88.462% (SPN171) 0.0707103258904489 1.74650800126199 0.040486688775176 0 0 TRUE Lachnoclostridium [Clostridium] populeti_nov_94.331% (SPN172) -0.104278558283634 1.68005443809313 -0.0620685591604939 0 0 TRUE Lachnospiraceae_[G-14] bacterium_MOT-184_nov_95.227% (SPN173) 3.92247854137222 1.45996078251318 2.6867013061954 0 0 TRUE Eubacteriales_[G-4] bacterium_MOT-164_nov_96.606% (SPN177) 0.392532981840529 1.54430877849176 0.254180373321386 0 0 TRUE Anaerotruncus colihominis_nov_94.091% (SPN180) 0.118331232574918 1.708283313725 0.0692690911537913 0 0 TRUE Mageeibacillus indolicus_nov_87.668% (SPN181) 0.120720729067789 1.76253766178426 0.0684925671009949 0 0 TRUE Lachnospiraceae_[G-12] bacterium_MOT-179_nov_94.796% (SPN182) -5.24564824603353 0.775287301914492 -6.76607011759376 0 0 TRUE Lachnoclostridium [Clostridium] populeti_nov_92.955% (SPN185) 0.152131270722162 1.47394835662255 0.103213433522705 0 0 TRUE Roseburia faecis_nov_95.475% (SPN186) 0.160131654755343 1.46753340834272 0.109116190367468 0 0 TRUE Muricomes intestini_nov_94.331% (SPN187) 0.44211473559398 1.24228001744453 0.355889758657993 0 0 TRUE Eubacteriales_[G-2] bacterium_MOT-162_nov_95.692% (SPN189) 0.468271940741144 1.42856079199169 0.327792799134773 0 0 TRUE Gracilibacter thermotolerans_nov_88.315% (SPN192) 3.52149809313246 1.13723215915847 3.09655162736367 0 0 TRUE Lachnospiraceae_[G-11] bacterium_MOT-176_nov_97.297% (SPN193) -0.0368452170420197 1.88945911051717 -0.0195004045533088 0 0 TRUE Oscillospiraceae_[G-2] bacterium_MOT-149_nov_93.919% (SPN195) -1.6239681288645 1.79557913117022 -0.904425820434947 0 0 TRUE Oscillospiraceae_[G-2] bacterium_MOT-149_nov_95.291% (SPN197) 0.571039060625983 1.34693142901493 0.423955554325144 0 0 TRUE Oscillibacter ruminantium_nov_93.919% (SPN198) -1.03616918909119 1.31820855212058 -0.786043443144349 0 0 TRUE Acetatifactor muris_nov_92.551% (SPN2) 4.29074025729729 1.75796894630181 2.44073723049751 0 0 TRUE Alistipes sp._MOT-127_nov_91.775% (SPN200) 3.28699477060063 0.950147293779001 3.45945811993774 0 0 TRUE Kineothrix alysoides_nov_97.059% (SPN204) -5.10031404405432 0.432728051358897 -11.7864188097762 0 0 TRUE Saccharibacteria_(TM7)_[G-3] bacterium_HMT_351_nov_96.847% (SPN208) 0.280762941360184 1.37095240351753 0.204794083762365 0 0 TRUE Christensenella hongkongensis_nov_86.353% (SPN21) -1.14693882240551 1.30251931528327 -0.880554176009341 0 0 TRUE Mediterraneibacter [Ruminococcus] gnavus_nov_97.045% (SPN210) 0.294612608997809 1.56708513430599 0.188000385268337 0 0 TRUE Muribaculum intestinale_nov_92.688% (SPN212) 3.64853678616509 1.67945901572235 2.17244764653922 0 0 TRUE Algimonas porphyrae_nov_83.596% (SPN215) -1.12690607440204 1.35683159694755 -0.830542328861761 0 0 TRUE Duncaniella freteri_nov_90.456% (SPN216) 2.63564488398436 2.17458358094483 1.21202280155137 0.225503652502035 1 FALSE Pseudoflavonifractor capillosus_nov_90.112% (SPN22) 0.643113430115862 1.28987081628377 0.498587472479396 0 0 TRUE Christensenella massiliensis_nov_87.416% (SPN221) 0.585225598765582 1.12880415468942 0.518447417414583 0 0 TRUE Lachnospiraceae_[G-9] bacterium_MOT-174_nov_96.136% (SPN226) 0.366478057557418 1.30251488041327 0.281361896949031 0 0 TRUE Peptostreptococcaceae_[XI][G-2] bacterium_HMT_091_nov_93.002% (SPN23) 0.78406571372254 0.972616978814941 0.806140269808845 0 0 TRUE Peptococcus sp._HMT_168_nov_89.979% (SPN25) 1.0521899856126 1.0220682414575 1.02947136300032 0 0 TRUE Parabacteroides goldsteinii_nov_93.074% (SPN27) 3.19110074645004 1.12812832604077 2.82866822221314 0 0 TRUE Saccharofermentans acetigenes_nov_88.739% (SPN3) 3.57239037320212 1.61785557381842 2.20810215139949 0 0 TRUE Roseburia faecis_nov_97.964% (SPN38) -1.98992706825573 1.91807811783537 -1.03745882388849 0 0 TRUE Duncaniella freteri_nov_93.103% (SPN49) 6.88912220084728 1.88667225318814 3.65146738613763 0 0 TRUE Muribaculaceae_[G-2] bacterium_MOT-104_nov_93.074% (SPN60) 3.43166337385738 2.05050797826914 1.6735674331558 0.0942156434200892 1 FALSE Muribaculaceae_[G-2] bacterium_MOT-104_nov_92.441% (SPN63) 5.7590206947773 1.87159456319734 3.0770663732528 0 0 TRUE Lacrimispora xylanolytica_nov_97.285% (SPN72) 3.97223644228814 1.50015951893674 2.6478760372787 0 0 TRUE Hydrogenoanaerobacterium saccharovorans_nov_93.636% (SPN74) 3.99623995428023 1.51956034807771 2.62986590781708 0 0 TRUE Culturomica massiliensis_nov_93.709% (SPN78) -2.49733374870569 0.832318405327827 -3.00045479316544 0 0 TRUE Kineothrix alysoides_nov_95.928% (SPN79) 4.42760032688893 1.86895086530086 2.36902981725856 0 0 TRUE Gracilibacter thermotolerans_nov_87.668% (SPN8) 3.28699477060063 0.950147293779001 3.45945811993774 0 0 TRUE Lachnospiraceae_[G-10] bacterium_MOT-175_nov_96.372% (SPN80) 3.90117203546779 1.44275542372115 2.70397322465501 0 0 TRUE Oscillospiraceae_[G-4] bacterium_MOT-151_nov_96.847% (SPN81) -1.35294767243612 1.38709072304288 -0.975385135204524 0 0 TRUE Muribaculaceae_[G-2] bacterium_MOT-104_nov_92.191% (SPN82) -4.09721032064067 0.407226606598507 -10.0612539904108 0 0 TRUE Eubacterium coprostanoligenes_nov_95.485% (SPN86) -1.81801642919631 1.58528678149211 -1.14680602299929 0 0 TRUE Lachnospiraceae_[G-12] bacterium_MOT-179_nov_92.534% (SPN88) -0.245370267702363 2.27512510033604 -0.107849132193268 0.914115368294401 1 FALSE Lachnospiraceae_[G-14] bacterium_MOT-184_nov_94.989% (SPN89) -3.84019791767611 0.37707080301355 -10.1842886985289 0 0 TRUE Pseudoflavonifractor capillosus_nov_95.721% (SPN90) -2.25392727446165 1.62057595386089 -1.39081865869468 0.164280423562325 1 FALSE Anaerotignum lactatifermentans_nov_95.270% (SPN91) 0.201762746034972 1.64139317021781 0.122921643452555 0 0 TRUE Alistipes timonensis_nov_97.831% (SPN94) -4.07244719419799 0.44681971459472 -9.11429612700019 0 0 TRUE Oscillospiraceae_[G-2] bacterium_MOT-149_nov_95.946% (SPN95) 1.99509630376872 1.91436305369549 1.04217238204498 0.297331765028749 1 FALSE Oscillospiraceae_[G-2] bacterium_MOT-149_nov_94.157% (SPN96) -3.28774690799953 0.64462837157889 -5.10022061229921 0 0 TRUE Alistipes senegalensis_nov_95.228% (SPN97) 0.290596496159084 1.36309238685206 0.213189141808788 0 0 TRUE Oscillospiraceae_[G-4] bacterium_MOT-151_nov_91.723% (SPN98) -0.041299626312741 1.62934924233364 -0.0253473136634535 0 0 TRUE Clostridium disporicum_saudiense (SPP1) -1.64315942066708 1.50226246276574 -1.0937898412518 0 0 TRUE Blautia hansenii_hominis_marasmi (SPP5) 3.8956255957998 1.6870541292977 2.30912898889706 0 0 TRUE multigenus multispecies_sppn10_2_nov_95.918% (SPPN10) -3.81173364604158 0.498796354484027 -7.64186348150956 0 0 TRUE multigenus multispecies_sppn11_2_nov_95.465% (SPPN11) 0.201762746034972 1.69736501628107 0.118868212847367 0 0 TRUE Alistipes multispecies_sppn12_2_nov_96.304% (SPPN12) 4.11693586335134 2.23412170117026 1.84275362492332 0.0653649905929053 1 FALSE multigenus multispecies_sppn14_2_nov_82.889% (SPPN14) 4.02627605878028 1.5438445440924 2.60795432686992 0 0 TRUE multigenus multispecies_sppn17_2_nov_95.928% (SPPN17) -1.57486334080878 1.74449935723683 -0.902759484705832 0 0 TRUE multigenus multispecies_sppn19_3_nov_96.818% (SPPN19) 0.164205025200268 1.67149150575796 0.0982386237887622 0 0 TRUE Bacteroidetes_[G-3] multispecies_sppn2_2_nov_87.554% (SPPN2) -4.19024768383288 0.375481526376116 -11.1596640300102 0 0 TRUE multigenus multispecies_sppn23_2_nov_96.818% (SPPN23) -0.133485788723782 1.91073092428838 -0.069861112847952 0 0 TRUE Anaerotignum multispecies_sppn26_2_nov_94.808% (SPPN26) 0.258282514428341 1.38892895890188 0.185958045422672 0 0 TRUE multigenus multispecies_sppn5_2_nov_97.279% (SPPN5) -3.92457222873037 0.488693538299456 -8.03074303455495 0 0 TRUE Bacteroides multispecies_sppn6_2_nov_96.312% (SPPN6) 6.05119919199406 1.43917738736244 4.20462358923247 2.61517010396813e-05 0.00311205242372208 TRUE multigenus multispecies_sppn8_3_nov_95.011% (SPPN8) -0.184709514890262 1.7448751786689 -0.105858296999313 0 0 TRUE multigenus multispecies_sppn9_2_nov_93.002% (SPPN9) -5.15099464704381 0.370342781171068 -13.9087216193488 0 0 TRUE