GroupAMD...1 GroupAMD...2 GroupAMD...3 GroupAMD...4 GroupAMD...5 GroupAMD...6 1 Coefficients Standard Errors Test Statistics W p Values Adjusted p Values Differential Abundance FusobacteriumFusobacterium nucleatum_subsp._animalis (SP1) -4.53471577201029 0.939112696854544 -4.8287237380549 0 0 TRUE Bacteroidaceae_[G-1]Bacteroidaceae_[G-1] sp._oral_taxon_272 (SP10) -0.791283857051861 0.587090805839382 -1.34780488670835 0 0 TRUE StomatobaculumStomatobaculum sp._oral_taxon_373 (SP105) 0.320510296270519 0.414019278783515 0.774143409969344 0 0 TRUE TM7_[G-5]TM7_[G-5] sp._oral_taxon_356 (SP108) 1.15296446461137 0.182282129876803 6.32516454240803 0 0 TRUE Peptostreptococcaceae_[XI][G-7]Peptostreptococcaceae_[XI][G-7] [Eubacterium]_yurii_subsp._yurii_&_margaretiae (SP11) -2.45342792495871 1.08314914855647 -2.26508780275407 0 0 TRUE StomatobaculumStomatobaculum sp._oral_taxon_097 (SP112) -1.55791094749676 0.806827161999756 -1.93091038684842 0 0 TRUE Peptostreptococcaceae_[XI][G-7]Peptostreptococcaceae_[XI][G-7] sp._oral_taxon_081 (SP113) 0.590495639660322 0.444259253765303 1.32916902609366 0 0 TRUE SelenomonasSelenomonas dianae (SP114) -1.181831079877 0.586115156300142 -2.01638034296421 0 0 TRUE OribacteriumOribacterium asaccharolyticum (SP115) -0.0451151264092667 0.437984361447964 -0.10300624949283 0 0 TRUE ParvimonasParvimonas micra (SP12) -4.32895425239865 0.298377168264299 -14.5083294327806 0 0 TRUE ActinomycesActinomyces sp._oral_taxon_169 (SP121) 0.124344445668174 0.371078417470137 0.335089403786683 0 0 TRUE RothiaRothia aeria (SP122) 0.841048233359396 0.225189160108001 3.73485221471597 0 0 TRUE GemellaGemella morbillorum (SP125) 0.160808757026965 0.373336127939285 0.43073451775103 0 0 TRUE FusobacteriumFusobacterium nucleatum_subsp._nucleatum (SP126) -0.833570136129001 0.709967424367091 -1.17409631416835 0 0 TRUE FusobacteriumFusobacterium periodonticum (SP129) -0.469738447445766 0.591212213074543 -0.79453441092317 0 0 TRUE EikenellaEikenella corrodens (SP13) -2.89557767184344 0.720379874956246 -4.0195149427506 5.83180831410341e-05 0.00740639655891133 TRUE ActinomycesActinomyces meyeri (SP132) 0.100787838536897 0.819371590209026 0.123006264485184 0 0 TRUE Bacteroidales_[G-2]Bacteroidales_[G-2] sp._oral_taxon_274 (SP133) 1.01433502849938 0.212290914610283 4.77804257596923 1.77009905841084e-06 0.000233653075710231 TRUE ParvimonasParvimonas sp._oral_taxon_393 (SP134) 0.335902504497745 0.402588627320415 0.83435666509875 0 0 TRUE StreptococcusStreptococcus gordonii (SP135) 0.320957600705598 0.765721862421116 0.419156898159824 0.675101469946491 1 FALSE GranulicatellaGranulicatella adiacens (SP14) -3.21343503512421 0.59329161834228 -5.41628254264386 0 0 TRUE AggregatibacterAggregatibacter sp._oral_taxon_513 (SP146) 0.197273068385756 0.670019848627711 0.294428693104834 0 0 TRUE ActinomycesActinomyces sp._oral_taxon_180 (SP147) -1.15754167930115 0.804223702852031 -1.43932798199821 0.150057618363991 1 FALSE LeptotrichiaLeptotrichia wadei (SP15) 0.147901052799451 0.25032268910573 0.59084157863525 0 0 TRUE AtopobiumAtopobium sp._oral_taxon_199 (SP150) 0.320510296270519 0.376812478323364 0.850583021285911 0 0 TRUE CampylobacterCampylobacter rectus (SP153) -0.0799858038382225 0.576154688119282 -0.138826959994575 0 0 TRUE PrevotellaPrevotella saccharolytica (SP157) -0.244820892431492 0.474080440060696 -0.516412135459856 0 0 TRUE AtopobiumAtopobium parvulum (SP158) -1.49453124332642 0.346961377906493 -4.30748590043125 0 0 TRUE AbiotrophiaAbiotrophia defectiva (SP159) 1.59057960305649 1.26946745779855 1.25295027713023 0.210223802866143 1 FALSE TreponemaTreponema denticola (SP16) 0.91036295141539 0.248681888856935 3.66075292253838 0.000251475175408751 0.0296740706982326 TRUE Peptostreptococcaceae_[XI][G-9]Peptostreptococcaceae_[XI][G-9] [Eubacterium]_brachy (SP160) -0.21045084104616 0.461271397946301 -0.456240820443543 0 0 TRUE TM7_[G-1]TM7_[G-1] sp._oral_taxon_952 (SP161) 0.420252135385442 0.567200703828477 0.740923155681639 0.458740034612908 1 FALSE LachnoanaerobaculumLachnoanaerobaculum saburreum (SP167) -0.710533008310954 0.290023651111807 -2.44991401765725 0 0 TRUE StreptococcusStreptococcus dentisani (SP17) -1.16437578923688 0.937836176791697 -1.24155563418354 0 0 TRUE SelenomonasSelenomonas sp._oral_taxon_919 (SP170) 0.0546831068145306 0.501570318013399 0.109023809525088 0 0 TRUE CapnocytophagaCapnocytophaga sp._oral_taxon_412 (SP173) 0.657790086984565 0.26399332095722 2.49169215569344 0 0 TRUE AcidaminococcusAcidaminococcus sp._str._D21 (SP175) 0.328058361867088 0.677405658728178 0.484286420758596 0 0 TRUE Peptostreptococcaceae_[XI][G-2]Peptostreptococcaceae_[XI][G-2] sp._oral_taxon_091 (SP176) 0.657790086984565 0.384809345365033 1.70939218318771 0 0 TRUE StreptococcusStreptococcus parasanguinis_I (SP179) 1.57915148767098 0.535591482653336 2.94842531820673 0 0 TRUE Peptostreptococcaceae_[XI][G-1]Peptostreptococcaceae_[XI][G-1] [Eubacterium]_infirmum (SP18) 0.286530488911439 0.362313778498284 0.790835198426759 0 0 TRUE DialisterDialister invisus (SP181) 0.171909508923685 0.450039622406369 0.381987497021889 0.702470638644754 1 FALSE EikenellaEikenella sp._oral_taxon_011 (SP182) 0.590495639660322 0.399485232513947 1.47814134691376 0 0 TRUE LachnoanaerobaculumLachnoanaerobaculum umeaense (SP183) -0.447141074767188 0.491088234916852 -0.910510663817665 0 0 TRUE PyramidobacterPyramidobacter piscolens (SP185) 0.043251424046541 0.579573352984649 0.0746263157610813 0 0 TRUE ActinomycesActinomyces timonensis (SP189) 0.563789361135417 0.41066319051305 1.37287532498607 0 0 TRUE StaphylococcusStaphylococcus epidermidis (SP19) 0.146863888234705 1.10654776645631 0.132722592450783 0.894412774742007 1 FALSE OribacteriumOribacterium sinus (SP190) -1.6811139312049 0.306545030727494 -5.48406844898211 0 0 TRUE Lachnospiraceae_[G-8]Lachnospiraceae_[G-8] sp._oral_taxon_500 (SP191) 0.299438193138954 0.462534274873921 0.647385954739409 0 0 TRUE StreptococcusStreptococcus parasanguinis_II (SP2) 2.87385688292252 2.11286751459099 1.3601689945424 0.173776451787387 1 FALSE CapnocytophagaCapnocytophaga gingivalis (SP20) 0.0221793209149758 0.38665628422504 0.0573618529424109 0 0 TRUE MegasphaeraMegasphaera micronuciformis (SP203) 0.0221793209149757 0.60240824305981 0.0368177580079587 0 0 TRUE ActinomycesActinomyces sp._oral_taxon_172 (SP204) 0.657790086984565 0.307545892885465 2.13883554357702 0 0 TRUE SelenomonasSelenomonas infelix (SP209) -0.0718214049341716 0.561876408242256 -0.127824204541447 0 0 TRUE StreptococcusStreptococcus sp._oral_taxon_423 (SP21) -1.22025944257812 0.977696779202561 -1.24809600331649 0.211995901750488 1 FALSE ActinomycesActinomyces lingnae_[NVP] (SP210) 1.56467416795481 0.773870382454329 2.02188144607944 0.0431886009839445 1 FALSE LeptotrichiaLeptotrichia sp._oral_taxon_392 (SP212) 0.841048233359396 0.225189160108001 3.73485221471597 0 0 TRUE BifidobacteriumBifidobacterium dentium (SP216) 0.563789361135418 0.388477899099463 1.45127782672411 0 0 TRUE StreptococcusStreptococcus intermedius (SP217) 1.36218312965122 0.666168530777433 2.04480257880318 0.0408743254319013 1 FALSE AtopobiumAtopobium rimae (SP22) -1.05847623952193 0.388878679777245 -2.72186749895427 0 0 TRUE TannerellaTannerella sp._oral_taxon_808 (SP221) 0.841048233359396 0.161351722840648 5.212514738315 0 0 TRUE ActinomycesActinomyces naeslundii (SP223) 0.702418797247407 0.251648464771741 2.79126994827701 0 0 TRUE SelenomonasSelenomonas sp._oral_taxon_388 (SP226) 0.174607331324355 0.690190642041819 0.252984205650496 0 0 TRUE SelenomonasSelenomonas sp._oral_taxon_481 (SP238) 0.413035000660142 0.555082883409243 0.744096085477068 0 0 TRUE StreptococcusStreptococcus tigurinus (SP24) -2.14040714690733 1.1396252156175 -1.87816759191974 0.0603582420760514 1 FALSE PorphyromonasPorphyromonas gingivalis (SP246) 0.841048233359396 0.225189160108001 3.73485221471597 0 0 TRUE AtopobiumAtopobium sp._oral_taxon_810 (SP255) 0.759955211737763 0.22261310187451 3.41379373153948 0 0 TRUE AggregatibacterAggregatibacter sp._oral_taxon_458 (SP256) 0.759955211737763 0.178276820486509 4.26278194587428 0 0 TRUE PorphyromonasPorphyromonas endodontalis (SP26) 0.841048233359396 0.118395914054013 7.10369306305371 0 0 TRUE CampylobacterCampylobacter sp._Oral_Taxon_G43 (SP262) -0.022449389347866 0.666432843735709 -0.0336858988251919 0 0 TRUE SelenomonasSelenomonas sp._oral_taxon_149 (SP265) 0.702418797247407 0.303186198338452 2.31679014776024 0 0 TRUE CatonellaCatonella morbi (SP268) 0.702418797247407 0.206212957150025 3.40627866917393 0 0 TRUE StreptococcusStreptococcus sp._oral_taxon_070 (SP27) -1.63937831232753 0.627807643897959 -2.61127485187802 0 0 TRUE PseudoramibacterPseudoramibacter alactolyticus (SP276) 0.702418797247407 0.13137160412115 5.34680840617309 0 0 TRUE NeisseriaNeisseria flavescens|subflava (SP29) 3.78311451198458 1.66917032706082 2.26646403344956 0.023422986870443 1 FALSE PropionibacteriumPropionibacterium acnes (SP298) 1.15296446461137 0.185035997427362 6.23102791154991 0 0 TRUE FretibacteriumFretibacterium fastidiosum (SP3) 0.702418797247407 0.225931385581653 3.10899167656168 0 0 TRUE FusobacteriumFusobacterium nucleatum_subsp._polymorphum (SP30) -4.30125118200535 0.524084277751575 -8.20717461790414 0 0 TRUE PrevotellaPrevotella oralis (SP304) 0.28653048891144 0.443826649659977 0.645590996239085 0 0 TRUE BilophilaBilophila wadsworthia (SP308) 0.313236767436344 0.566940492186128 0.552503784353981 0 0 TRUE OlsenellaOlsenella uli (SP309) -0.519430719305467 0.275704590297129 -1.88401186482123 0 0 TRUE PorphyromonasPorphyromonas sp._oral_taxon_275 (SP32) 0.108335904133466 0.749199981351165 0.144602118032738 0 0 TRUE Veillonellaceae_[G-1]Veillonellaceae_[G-1] sp._oral_taxon_129 (SP323) 0.841048233359396 0.161351722840648 5.212514738315 0 0 TRUE FusobacteriumFusobacterium nucleatum_subsp._vincentii (SP33) -3.01066807894804 0.844245981650488 -3.56610294201488 0 0 TRUE RothiaRothia dentocariosa (SP34) 0.213949390173566 0.77908629903587 0.274615778044526 0 0 TRUE FusobacteriumFusobacterium sp._oral_taxon_203 (SP35) -0.318770297532709 0.556127056388565 -0.573196887061695 0 0 TRUE AnaeroglobusAnaeroglobus geminatus (SP354) -0.267987255536517 0.469227070058715 -0.571124883104002 0 0 TRUE StreptococcusStreptococcus sp._oral_taxon_058 (SP36) -0.644261581120065 0.732180645905826 -0.879921621423097 0 0 TRUE FretibacteriumFretibacterium sp._oral_taxon_360 (SP37) 0.590495639660322 0.322312931946843 1.83205692707889 0 0 TRUE StreptococcusStreptococcus sinensis (SP38) 0.0566535661031332 0.858610088699796 0.0659828795966332 0 0 TRUE HaemophilusHaemophilus parainfluenzae (SP39) -1.55839940362109 1.41322476028013 -1.10272579947735 0.270146259383076 1 FALSE RothiaRothia mucilaginosa (SP4) 1.54711235125693 2.2322805907387 0.693063568117557 0.488269659571097 1 FALSE LeptotrichiaLeptotrichia buccalis (SP40) 0.563789361135417 0.261860593417242 2.15301337928724 0 0 TRUE CampylobacterCampylobacter showae (SP41) -2.29823199782459 1.0126826577602 -2.26944934843428 0 0 TRUE PorphyromonasPorphyromonas sp._oral_taxon_277 (SP415) 0.274405564548153 0.601431570673038 0.456254007818506 0 0 TRUE StreptococcusStreptococcus cristatus (SP42) -0.984620146089482 1.12138433929065 -0.878039858049313 0.379922088885022 1 FALSE StreptococcusStreptococcus vestibularis (SP43) 1.42182288515818 0.699632783440158 2.0322416542103 0.0421291979078006 1 FALSE StreptococcusStreptococcus salivarius (SP44) -0.0759452623747187 0.808748319459534 -0.0939046926557708 0 0 TRUE CampylobacterCampylobacter gracilis (SP45) -2.40722687686762 0.462671063802795 -5.20289048785997 0 0 TRUE OribacteriumOribacterium sp._oral_taxon_078 (SP46) -1.77752220144659 0.691009549807285 -2.57235547893994 0 0 TRUE CampylobacterCampylobacter concisus (SP47) -3.09773998714901 0.473689514413611 -6.53960008167747 0 0 TRUE MogibacteriumMogibacterium timidum (SP49) -1.49853379447734 0.500811573057286 -2.99221079363101 0 0 TRUE StreptococcusStreptococcus anginosus (SP5) 1.79377614714348 2.3599419878911 0.760093322779704 0.447198803646086 1 FALSE VeillonellaVeillonella atypica (SP52) -2.51994037251455 1.1269532311995 -2.23606472988449 0 0 TRUE StreptococcusStreptococcus mitis (SP53) 1.42880336310926 0.798137338070041 1.79017231115164 0.0734262148908013 1 FALSE FusobacteriumFusobacterium sp._oral_taxon_370 (SP56) -0.898854716282643 0.81484090850917 -1.10310455316632 0 0 TRUE StreptococcusStreptococcus constellatus (SP57) -0.96729520881526 1.65322836318224 -0.585094733647895 0.558484019750069 1 FALSE FusobacteriumFusobacterium canifelinum (SP58) -0.234931237348696 0.62555904348661 -0.375554058077852 0 0 TRUE MogibacteriumMogibacterium diversum (SP6) -1.97092526777614 0.524621948132321 -3.75684866939465 0 0 TRUE StreptococcusStreptococcus sanguinis (SP60) 1.36051883678492 1.25063469730125 1.08786269861278 0.276655725405214 1 FALSE VeillonellaVeillonella sp._oral_taxon_780 (SP61) 0.0546831068145306 0.651635640621584 0.0839166911778633 0 0 TRUE StreptococcusStreptococcus oralis (SP62) 0.827519403131953 0.461151195564301 1.79446439929389 0.0727390759996803 1 FALSE StreptococcusStreptococcus sp._Oral_Taxon_B66 (SP63) 2.21653895101756 1.52419995033273 1.45423108728857 0.145882248883415 1 FALSE PorphyromonasPorphyromonas sp._oral_taxon_279 (SP65) 0.702418797247407 0.166756349738124 4.21224618043327 0 0 TRUE StomatobaculumStomatobaculum longum (SP66) -3.19179040183877 0.902787976725975 -3.53548173449764 0 0 TRUE PrevotellaPrevotella oris (SP67) 0.759955211737763 0.22261310187451 3.41379373153948 0 0 TRUE FusobacteriumFusobacterium sp._HOT_204 (SP68) -0.0849243263562965 0.630932839471483 -0.134601214334374 0 0 TRUE SlackiaSlackia exigua (SP69) -1.88046445734687 0.418257518930115 -4.4959489602411 0 0 TRUE VeillonellaVeillonella parvula_group (SP7) -6.55072721007809 0.298669155237142 -21.93305567452 1.25696483009081e-106 1.8603079485344e-104 TRUE LeptotrichiaLeptotrichia sp._oral_taxon_498 (SP70) 0.28653048891144 0.306378378808704 0.935217720080511 0 0 TRUE DialisterDialister pneumosintes (SP73) -1.50276400661329 0.274767871204635 -5.46921297612013 0 0 TRUE EggerthiaEggerthia catenaformis (SP75) 0.702418797247407 0.225931385581653 3.10899167656168 0 0 TRUE PrevotellaPrevotella sp._oral_taxon_304 (SP76) 0.841048233359396 0.225189160108001 3.73485221471597 0 0 TRUE StreptococcusStreptococcus sp._oral_taxon_064 (SP78) -0.761818914100489 0.65150111472519 -1.16932864254857 0 0 TRUE LeptotrichiaLeptotrichia sp._oral_taxon_215 (SP79) -0.0718214049341713 0.262529478231551 -0.273574630239522 0 0 TRUE PeptostreptococcusPeptostreptococcus stomatis (SP8) -3.08201076126124 1.20102762213772 -2.56614477839863 0 0 TRUE PrevotellaPrevotella maculosa (SP80) -0.0718214049341716 0.43851715136857 -0.163782430652994 0 0 TRUE BacteroidesBacteroides heparinolyticus (SP81) 0.132856368551933 0.790875668691888 0.167986415325784 0 0 TRUE ActinomycesActinomyces odontolyticus (SP83) -1.30236794387499 0.562007048529401 -2.31735161913518 0 0 TRUE PrevotellaPrevotella salivae (SP85) 0.621325775625774 0.291525551092573 2.13129097362884 0 0 TRUE SelenomonasSelenomonas sputigena (SP86) -0.278636158440279 0.524575622829745 -0.531164900376456 0 0 TRUE TannerellaTannerella forsythia (SP87) 0.390789873638097 0.562404030865303 0.694856103781538 0 0 TRUE SolobacteriumSolobacterium moorei (SP88) -0.968798208956889 0.349854054395162 -2.76914958333633 0 0 TRUE PrevotellaPrevotella denticola (SP89) 0.401603317892152 0.376379810319145 1.0670161015056 0 0 TRUE LeptotrichiaLeptotrichia sp._oral_taxon_417 (SP9) 0.563789361135418 0.303858449015169 1.85543420945742 0 0 TRUE PrevotellaPrevotella sp._oral_taxon_317 (SP91) 0.0668080311778176 0.478888011820057 0.139506585107252 0 0 TRUE StreptococcusStreptococcus sp._oral_taxon_056 (SP96) 1.92572507795095 0.830021665083158 2.32009013615086 0 0 TRUE CapnocytophagaCapnocytophaga gingivalis_nov_97.912% (SPN106) 0.841048233359396 0.225189160108001 3.73485221471597 0 0 TRUE ActinomycesActinomyces naeslundii_nov_97.980% (SPN123) 0.841048233359396 0.225189160108001 3.73485221471597 0 0 TRUE StreptococcusStreptococcus oralis_nov_97.992% (SPN134) 1.4276175367784 0.406950491912375 3.50808652440649 0 0 TRUE FusobacteriumFusobacterium sp._oral_taxon_370_nov_97.650% (SPN25) 0.413035000660141 0.542792807638201 0.76094412978193 0 0 TRUE LaceyellaLaceyella sediminis_nov_84.583% (SPN37) 0.759955211737763 0.295184986487919 2.57450495968523 0 0 TRUE Bacteroidetes_[G-5]Bacteroidetes_[G-5] sp._oral_taxon_511_nov_96.901% (SPN48) 1.15296446461137 0.182282129876803 6.32516454240803 0 0 TRUE ActinomycesActinomyces meyeri_nov_87.247% (SPN82) 0.841048233359396 0.225189160108001 3.73485221471597 0 0 TRUE Clostridiales_[G]Clostridiales_[G] sp._Oral_Taxon_C16_nov_79.093% (SPN93) -0.109669804861877 0.610222381712524 -0.179721046209581 0 0 TRUE FusobacteriumFusobacterium naviforme_nucleatum_subsp._vincentii (SPP11) 0.262973881780163 0.517298723869331 0.508359811547862 0 0 TRUE StreptococcusStreptococcus salivarius_vestibularis (SPP12) -0.1262081480309 0.323404922645751 -0.390248073524672 0 0 TRUE OribacteriumOribacterium asaccharolyticum_parvum (SPP3) 0.0221793209149759 0.32548395163341 0.068142594446427 0 0 TRUE VeillonellaVeillonella denticariosi_parvula_group (SPP4) -0.228373272784098 0.445849619749952 -0.512220404970128 0 0 TRUE