GroupAmoxicillin...1 GroupAmoxicillin...2 GroupAmoxicillin...3 GroupAmoxicillin...4 GroupAmoxicillin...5 GroupAmoxicillin...6 1 Coefficients Standard Errors Test Statistics W p Values Adjusted p Values Differential Abundance FusobacteriumFusobacterium nucleatum_subsp._animalis (SP1) -0.651232973250104 1.26241389816909 -0.515863279226096 0.605949902569538 1 FALSE Bacteroidaceae_[G-1]Bacteroidaceae_[G-1] sp._oral_taxon_272 (SP10) 0.345691088605143 1.07490622042639 0.321601161139448 0.74775486407305 1 FALSE StomatobaculumStomatobaculum sp._oral_taxon_373 (SP105) -0.506100690907374 0.4564222008376 -1.10884328145872 0.267497795406033 1 FALSE Peptostreptococcaceae_[XI][G-7]Peptostreptococcaceae_[XI][G-7] [Eubacterium]_yurii_subsp._yurii_&_margaretiae (SP11) 0.0027352649128822 1.46248138946193 0.00187029040683284 0.998507725030163 1 FALSE StomatobaculumStomatobaculum sp._oral_taxon_097 (SP112) -0.108963376478911 1.18183949408206 -0.092198117447025 0.926540633735454 1 FALSE Peptostreptococcaceae_[XI][G-7]Peptostreptococcaceae_[XI][G-7] sp._oral_taxon_081 (SP113) -0.155022325895938 0.516883073507346 -0.299917590344028 0.7642400164764 1 FALSE SelenomonasSelenomonas dianae (SP114) -0.102392548710356 0.820854758044966 -0.12473893548991 0.900730232053372 1 FALSE OribacteriumOribacterium asaccharolyticum (SP115) 0.354083928424949 0.71891537186756 0.492525187638051 0.622348120521926 1 FALSE ParvimonasParvimonas micra (SP12) -0.543592667858337 0.468257644131781 -1.16088370295853 0.245689197221497 1 FALSE ActinomycesActinomyces sp._oral_taxon_169 (SP121) -0.0358256394746786 0.600674164938992 -0.0596423844503406 0.952440460524526 1 FALSE GemellaGemella morbillorum (SP125) -0.804431666262918 0.390732754254256 -2.05877715012205 0 0 TRUE FusobacteriumFusobacterium nucleatum_subsp._nucleatum (SP126) -0.204455334842757 1.0711170828007 -0.190880472476602 0.848619239579421 1 FALSE FusobacteriumFusobacterium periodonticum (SP129) -0.571481248028387 0.835605268375212 -0.683912930730559 0.494030148266624 1 FALSE EikenellaEikenella corrodens (SP13) 0.754223461056556 0.505650961903977 1.49158909579961 0.135806898520694 1 FALSE ActinomycesActinomyces meyeri (SP132) 0.30940679787377 1.10274436162131 0.280578898103696 0.779033402996561 1 FALSE ParvimonasParvimonas sp._oral_taxon_393 (SP134) -0.35207904656816 0.492155003111818 -0.715382439154371 0.474372760579298 1 FALSE StreptococcusStreptococcus gordonii (SP135) -0.0985413228257509 0.69598617090302 -0.141585173593172 0.887407678702003 1 FALSE GranulicatellaGranulicatella adiacens (SP14) -0.782292904195747 0.760027258034461 -1.0292958521236 0.303340671843234 1 FALSE AggregatibacterAggregatibacter sp._oral_taxon_513 (SP146) 0.157027207752727 1.04525951944093 0.150227962369303 0.880584765450185 1 FALSE ActinomycesActinomyces sp._oral_taxon_180 (SP147) 0.155758975562358 1.03268217577957 0.150829538085885 0.880110184792878 1 FALSE LeptotrichiaLeptotrichia wadei (SP15) 0.257716311046401 0.42496825598496 0.606436615951668 0.544224860094779 1 FALSE AtopobiumAtopobium sp._oral_taxon_199 (SP150) 0.120998152278456 0.661900961322836 0.182804013513798 0.854951799351385 1 FALSE CampylobacterCampylobacter rectus (SP153) -0.364986750795674 0.689587119572137 -0.529283016513032 0.596609135273662 1 FALSE PrevotellaPrevotella saccharolytica (SP157) -0.207934256902124 0.702457378760535 -0.296009783923143 0.767222609567742 1 FALSE AtopobiumAtopobium parvulum (SP158) -0.294222375804408 0.436309713887247 -0.674342941354825 0.500093309440217 1 FALSE AbiotrophiaAbiotrophia defectiva (SP159) -0.469636379548583 0.403730760619995 -1.16324150983041 0.244731529231331 1 FALSE TreponemaTreponema denticola (SP16) -0.262821626042476 0.275087622315171 -0.955410584564064 0.339370103431316 1 FALSE Peptostreptococcaceae_[XI][G-9]Peptostreptococcaceae_[XI][G-9] [Eubacterium]_brachy (SP160) -0.0349347694048026 0.605091694236847 -0.0577346701955032 0.953959976922204 1 FALSE TM7_[G-1]TM7_[G-1] sp._oral_taxon_952 (SP161) -0.396387500557607 0.672816782609402 -0.589146273997933 0.555763154059362 1 FALSE LachnoanaerobaculumLachnoanaerobaculum saburreum (SP167) 0.482131616647017 0.32692777962862 1.47473431959408 0.140283985440628 1 FALSE StreptococcusStreptococcus dentisani (SP17) -0.79369637535789 1.28289173565394 -0.618677596323675 0.536128771851224 1 FALSE SelenomonasSelenomonas sp._oral_taxon_919 (SP170) -0.0916884040309317 0.755392075869435 -0.121378562153172 0.9033911962474 1 FALSE CapnocytophagaCapnocytophaga sp._oral_taxon_412 (SP173) 0.10843797203065 0.372898868635528 0.290797267439921 0.771206375346986 1 FALSE AcidaminococcusAcidaminococcus sp._str._D21 (SP175) 0.0850015211060511 1.01141537706614 0.0840421482938285 0.933022920791986 1 FALSE Peptostreptococcaceae_[XI][G-1]Peptostreptococcaceae_[XI][G-1] [Eubacterium]_infirmum (SP18) -0.458987476644821 0.472527793253054 -0.971344930813452 0.331376541528381 1 FALSE DialisterDialister invisus (SP181) 0.048417053540582 0.569542302744871 0.0850104606931553 0.932253074385942 1 FALSE EikenellaEikenella sp._oral_taxon_011 (SP182) 0.0144372461815025 0.567280290817594 0.0254499343890386 0.979696082106292 1 FALSE LachnoanaerobaculumLachnoanaerobaculum umeaense (SP183) -0.14430963731152 0.727032267314298 -0.198491378992859 0.842660629135419 1 FALSE PyramidobacterPyramidobacter piscolens (SP185) -0.160656501289277 0.914687227284853 -0.17564091472685 0.86057605669239 1 FALSE ActinomycesActinomyces timonensis (SP189) 0.0379938533127791 0.590354970079486 0.0643576411454003 0.948685457538071 1 FALSE StaphylococcusStaphylococcus epidermidis (SP19) -0.314665547600079 1.3526031802508 -0.232637001150429 0.816043292711512 1 FALSE OribacteriumOribacterium sinus (SP190) 0.344020552020303 0.576539556813194 0.596698956654191 0.550708389320428 1 FALSE Lachnospiraceae_[G-8]Lachnospiraceae_[G-8] sp._oral_taxon_500 (SP191) -0.665802230150929 0.491552732816454 -1.35448790272424 0 0 TRUE NeisseriaNeisseria mucosa (SP195) 1.52234901204171 0.893627989282517 1.7035601282632 0 0 TRUE StreptococcusStreptococcus parasanguinis_II (SP2) 0.440083587351356 0.615157668566894 0.715399660670084 0.474362122116647 1 FALSE CapnocytophagaCapnocytophaga gingivalis (SP20) 0.315252725536757 0.59855028561657 0.526693801861633 0.598406240516798 1 FALSE MegasphaeraMegasphaera micronuciformis (SP203) 0.0617150017943483 0.86975591476129 0.0709566911209639 0.943432224043737 1 FALSE ActinomycesActinomyces sp._oral_taxon_172 (SP204) 0.628975909119527 0.678029352179195 0.927652921068962 0.353587636779997 1 FALSE SelenomonasSelenomonas infelix (SP209) 0.443184424658549 0.64350373240219 0.688705290028619 0.491008746513435 1 FALSE StreptococcusStreptococcus sp._oral_taxon_423 (SP21) -0.0190298691329241 0.924530319572079 -0.0205832829168135 0.983578075941855 1 FALSE ActinomycesActinomyces lingnae_[NVP] (SP210) 0.349232532895837 0.43547074042805 0.801965552387184 0.422572884938531 1 FALSE PrevotellaPrevotella sp._oral_taxon_376 (SP211) 0.291696118405481 0.260592987775728 1.11935520942153 0 0 TRUE BifidobacteriumBifidobacterium dentium (SP216) -0.124192189930487 0.47400122651808 -0.262008161545864 0.793315149936118 1 FALSE StreptococcusStreptococcus intermedius (SP217) 1.02632233783464 0.556724675368684 1.84350071631902 0.0652559372281268 1 FALSE AtopobiumAtopobium rimae (SP22) -0.0562471128054947 0.564798565551198 -0.0995879172437382 0.920671486777253 1 FALSE TannerellaTannerella sp._oral_taxon_808 (SP221) 0.372789140027114 0.379180656956337 0.983143874003154 0.325536633532454 1 FALSE ActinomycesActinomyces naeslundii (SP223) 0.0144372461815025 0.361113632919962 0.0399797871511056 0.968109240924058 1 FALSE SelenomonasSelenomonas sp._oral_taxon_388 (SP226) -0.0974859114055823 0.911083464668014 -0.106999978801179 0.914788996573394 1 FALSE SelenomonasSelenomonas sp._oral_taxon_481 (SP238) -0.19385352878413 0.671118499338377 -0.2888514159202 0.772695084060423 1 FALSE StreptococcusStreptococcus tigurinus (SP24) -0.206204167239968 1.46494748287792 -0.140758743675148 0.888060536265082 1 FALSE PorphyromonasPorphyromonas gingivalis (SP246) 0.556047286401945 0.556373918435863 0.999412927128509 0.317594700155342 1 FALSE AtopobiumAtopobium sp._oral_taxon_810 (SP255) 0.0719736606718587 0.350885139558364 0.205120287403585 0.837478146366096 1 FALSE AggregatibacterAggregatibacter sp._oral_taxon_458 (SP256) 0.361357457259124 0.520340497662427 0.694463450149437 0.487391614478339 1 FALSE CampylobacterCampylobacter sp._Oral_Taxon_G43 (SP262) 0.00063867188411237 0.81461337460428 0.000784018411706808 0.999374443878001 1 FALSE SelenomonasSelenomonas sp._oral_taxon_149 (SP265) -0.0430991683088536 0.397755731998198 -0.108355869800637 0.913713405757963 1 FALSE CatonellaCatonella morbi (SP268) -0.262821626042476 0.24341849416337 -1.07971100119485 0 0 TRUE StreptococcusStreptococcus sp._oral_taxon_070 (SP27) -0.821478571826035 0.922751295196397 -0.89024916692335 0.373332109532935 1 FALSE PseudoramibacterPseudoramibacter alactolyticus (SP276) -0.0430991683088536 0.257678698540152 -0.167259337124204 0.867165997644782 1 FALSE NeisseriaNeisseria flavescens|subflava (SP29) 1.55656791088174 0.621272443982635 2.50545139408316 0.0122295205972959 1 FALSE FretibacteriumFretibacterium fastidiosum (SP3) -0.0430991683088537 0.339814472487016 -0.126831467751864 0.899073789188837 1 FALSE FusobacteriumFusobacterium nucleatum_subsp._polymorphum (SP30) 0.646953053622639 0.794928531091075 0.813850589479618 0.415730549583148 1 FALSE PrevotellaPrevotella oralis (SP304) 0.00152954195398853 0.509298916697192 0.00300323033064279 0.997603772488732 1 FALSE BilophilaBilophila wadsworthia (SP308) 0.00716371734732757 0.800246390944392 0.00895188960349259 0.99285752089083 1 FALSE OlsenellaOlsenella uli (SP309) -0.0346860352517512 0.443993150610081 -0.0781229061846784 0.937730286375938 1 FALSE PorphyromonasPorphyromonas sp._oral_taxon_275 (SP32) -0.229805675970586 0.921273412584725 -0.249443512459393 0.803017730527717 1 FALSE FusobacteriumFusobacterium nucleatum_subsp._vincentii (SP33) 0.120854648535249 1.14040388465963 0.105975304154036 0.915601946257914 1 FALSE FusobacteriumFusobacterium sp._oral_taxon_203 (SP35) -0.130346521663837 0.84000231439437 -0.155174003011903 0.876684142609621 1 FALSE AnaeroglobusAnaeroglobus geminatus (SP354) -0.874875784980788 0.509800741378175 -1.71611320653572 0.0861413245348541 1 FALSE StreptococcusStreptococcus sp._oral_taxon_058 (SP36) -0.144208881641883 0.994459560362923 -0.145012313612084 0.884701149700517 1 FALSE FretibacteriumFretibacterium sp._oral_taxon_360 (SP37) 0.243463707042103 0.621139034294188 0.391963302256081 0.695085329128652 1 FALSE StreptococcusStreptococcus sinensis (SP38) 0.463755410909395 1.27507093987471 0.363709497571141 0.716074950384141 1 FALSE HaemophilusHaemophilus parainfluenzae (SP39) 0.46517184749509 1.02636437025252 0.453222910866093 0.650388236432667 1 FALSE RothiaRothia mucilaginosa (SP4) 2.18166216402142 2.00131084254103 1.09011659640608 0.275661786432114 1 FALSE LeptotrichiaLeptotrichia buccalis (SP40) 0.176623289424768 0.339217647906843 0.520678362445555 0.602590850045187 1 FALSE CampylobacterCampylobacter showae (SP41) 0.558622600906831 1.37657059334437 0.405807449038745 0.684884084971624 1 FALSE PorphyromonasPorphyromonas sp._oral_taxon_277 (SP415) -0.332482964896119 0.672546192716226 -0.4943645038764 0.621048777815999 1 FALSE StreptococcusStreptococcus cristatus (SP42) 0.00747234537571247 0.935833353900514 0.00798469657505586 0.993629201575584 1 FALSE StreptococcusStreptococcus vestibularis (SP43) 0.897400537680877 0.804580185100801 1.11536494969541 0.264694063109136 1 FALSE StreptococcusStreptococcus salivarius (SP44) 0.864340272171523 1.2729005728689 0.679032039575134 0.497117561375573 1 FALSE CampylobacterCampylobacter gracilis (SP45) 0.504476278939321 0.7607109713333 0.663164195009734 0.507225400227018 1 FALSE OribacteriumOribacterium sp._oral_taxon_078 (SP46) 0.857633057075962 1.11076617899101 0.772109444181145 0.440049609127939 1 FALSE CampylobacterCampylobacter concisus (SP47) 0.121841524026724 0.773619550305574 0.157495404528748 0.874854429353605 1 FALSE MogibacteriumMogibacterium timidum (SP49) -0.685196989529074 0.659142409089068 -1.0395279989282 0.298559243355436 1 FALSE StreptococcusStreptococcus anginosus (SP5) 0.135610644612157 0.62486723990472 0.217023130597845 0.828190318888821 1 FALSE VeillonellaVeillonella atypica (SP52) 1.2681285310262 1.27330866074244 0.995931756473554 0.319283304281065 1 FALSE StreptococcusStreptococcus mitis (SP53) 0.103374410433792 0.5383618684115 0.192016590511527 0.847729209888009 1 FALSE FusobacteriumFusobacterium sp._oral_taxon_370 (SP56) -0.190821079236194 1.07323448843109 -0.17779998806705 0.858880056720668 1 FALSE StreptococcusStreptococcus constellatus (SP57) 0.033500258876941 0.833786078162949 0.0401784819323811 0.967950832705626 1 FALSE FusobacteriumFusobacterium canifelinum (SP58) -0.157184509116781 0.833199640889794 -0.188651676504469 0.85036582795089 1 FALSE MogibacteriumMogibacterium diversum (SP6) 0.978690527523217 0.877473741354581 1.11535021664852 0.264700374085748 1 FALSE StreptococcusStreptococcus sanguinis (SP60) -0.0288073755124247 0.583004310671052 -0.0494119425622543 0.960591011000054 1 FALSE VeillonellaVeillonella sp._oral_taxon_780 (SP61) 0.345521851316687 0.999044721573402 0.345852236497004 0.729453765703579 1 FALSE StreptococcusStreptococcus oralis (SP62) -0.150898468455391 0.542784613414365 -0.278008006723275 0.781006212472211 1 FALSE StreptococcusStreptococcus sp._Oral_Taxon_B66 (SP63) 0.0590659564443445 0.379015968422198 0.155840284751668 0.876158915894778 1 FALSE PorphyromonasPorphyromonas sp._oral_taxon_279 (SP65) -0.124192189930487 0.276005852499816 -0.449962161329784 0.652737724529794 1 FALSE StomatobaculumStomatobaculum longum (SP66) -0.126472877782596 1.31092106134668 -0.0964763489669418 0.923142257082314 1 FALSE PrevotellaPrevotella oris (SP67) 0.0144372461815026 0.315086817112259 0.0458198991434125 0.963453798243832 1 FALSE FusobacteriumFusobacterium sp._HOT_204 (SP68) 0.354408867570349 0.9962644941439 0.355737727936291 0.722036988023705 1 FALSE SlackiaSlackia exigua (SP69) 0.0902671607099832 0.674037059740415 0.133920174574299 0.893465696984535 1 FALSE VeillonellaVeillonella parvula_group (SP7) -0.320301973289915 0.387808283142499 -0.825928653958692 0.40884456508628 1 FALSE LeptotrichiaLeptotrichia sp._oral_taxon_498 (SP70) 0.0955302678031354 0.439491641973322 0.217365380088239 0.827923608883538 1 FALSE DialisterDialister pneumosintes (SP73) 0.233298561572882 0.548442017412739 0.425384186779602 0.670556631695276 1 FALSE PrevotellaPrevotella sp._oral_taxon_304 (SP76) 0.0955302678031354 0.375817165064594 0.254193466088 0.799346098172149 1 FALSE StreptococcusStreptococcus sp._oral_taxon_064 (SP78) -0.249023051745085 0.916807953273179 -0.271619646029493 0.785914491852923 1 FALSE LeptotrichiaLeptotrichia sp._oral_taxon_215 (SP79) -0.401451062154465 0.349770476638241 -1.14775571115362 0.251069425322067 1 FALSE PeptostreptococcusPeptostreptococcus stomatis (SP8) -0.819836302639907 1.73289907677762 -0.473101009531622 0.636141116581718 1 FALSE PrevotellaPrevotella maculosa (SP80) -0.343914647664108 0.627895157009312 -0.547726230764681 0.583879898178072 1 FALSE BacteroidesBacteroides heparinolyticus (SP81) -0.0202954526286657 1.09222352490962 -0.0185817757682385 0.985174741157267 1 FALSE ActinomycesActinomyces odontolyticus (SP83) 0.451832689493188 0.832114010336071 0.542993729081312 0.58713412007222 1 FALSE PrevotellaPrevotella salivae (SP85) 0.0144372461815024 0.378923517807152 0.0381006865582043 0.969607403914798 1 FALSE SelenomonasSelenomonas sputigena (SP86) 0.107044238167431 0.909602446971094 0.117682443053974 0.906319278515727 1 FALSE TannerellaTannerella forsythia (SP87) 0.199789652529793 0.913935530131331 0.218603660699221 0.826958800945815 1 FALSE SolobacteriumSolobacterium moorei (SP88) -1.43705730228917 0.428458722918041 -3.35401574392515 0.000796478308646762 0.109117528284606 FALSE PrevotellaPrevotella denticola (SP89) -0.0666557754401302 0.517251462471973 -0.128865320402534 0.89746421812463 1 FALSE LeptotrichiaLeptotrichia sp._oral_taxon_417 (SP9) -0.181728604420843 0.397151383552406 -0.457580187170273 0.647254080505205 1 FALSE PrevotellaPrevotella sp._oral_taxon_317 (SP91) -0.0220270651772884 0.641411330279143 -0.0343415592108456 0.972604784942009 1 FALSE SelenomonasSelenomonas noxia (SP95) 0.43032555451747 0.205742563130882 2.09157282756179 0 0 TRUE CapnocytophagaCapnocytophaga gingivalis_nov_97.912% (SPN106) 0.153066682293492 0.416899729830866 0.367154668955027 0.713503650488705 1 FALSE ActinomycesActinomyces naeslundii_nov_97.980% (SPN123) 0.153066682293492 0.416899729830866 0.367154668955027 0.713503650488705 1 FALSE FusobacteriumFusobacterium sp._oral_taxon_370_nov_97.650% (SPN25) 0.175311809315537 0.86916545826185 0.201701307442802 0.840150240416878 1 FALSE LaceyellaLaceyella sediminis_nov_84.583% (SPN37) -0.0666557754401303 0.379351852280157 -0.17570963484028 0.860522065567758 1 FALSE ActinomycesActinomyces meyeri_nov_87.247% (SPN82) 0.403619275992565 0.511151251866307 0.789627873391441 0.42974512502228 1 FALSE Clostridiales_[G]Clostridiales_[G] sp._Oral_Taxon_C16_nov_79.093% (SPN93) -0.415742854950894 0.924224652232231 -0.449828787780949 0.652833898573659 1 FALSE FusobacteriumFusobacterium naviforme_nucleatum_subsp._vincentii (SPP11) -0.0840580508380562 0.685599761198374 -0.122605134358754 0.902419788492314 1 FALSE StreptococcusStreptococcus salivarius_vestibularis (SPP12) 0.932593535888701 0.699292027526851 1.33362529412348 0.182326689069221 1 FALSE OribacteriumOribacterium asaccharolyticum_parvum (SPP3) 0.189530993652283 0.605734682992851 0.312894405708843 0.754360887935484 1 FALSE VeillonellaVeillonella denticariosi_parvula_group (SPP4) 1.23963633419462 0.722126223515502 1.71664771867686 0.0860435580165832 1 FALSE