#Species	pool1.10.1.6	pool1.2040.1.5.6	pool1.2040.2.0.7	pool1.2092.1.7	pool1.2093.1.2.7	pool1.22.2.6	pool1.490.0.6	pool1.60.3.6	pool1.69.4.6	pool2.2040.3.0.8	pool2.2093.1.W1.0.2	pool2.2093.3.0.9	pool2.47.0.7	pool2.483.0.3	pool2.488.0.4	pool2.489.0.5	pool2.492.0.6
Parabacteroides distasonis (SP106)	0	1225	485	1317	1706	0	83	0	0	134	0	62	0	0	304	0	0
Ligilactobacillus murinus (SP16)	0	833	3704	2857	357	0	240	0	0	13840	0	11071	0	252	974	874	18
Rodentibacter pneumotropicus (SP18)	0	0	0	0	0	0	634	0	0	0	0	0	0	184	7681	7631	409
Muribaculum intestinale (SP24)	0	809	1082	436	376	0	18	0	0	304	0	64	0	4	116	6	0
Faecalibaculum rodentium (SP26)	0	6510	12429	301	191	0	48	0	0	345	0	107	0	92	0	0	0
Lactobacillus reuteri (SP28)	576	3202	4899	2691	3269	0	92	0	0	1906	0	554	0	167	215	13	2
Escherichia coli (SP3)	3461	0	0	0	0	9323	0	118880	0	0	0	0	75	3	0	0	0
Muribacter muris (SP34)	0	0	0	0	0	0	727	0	0	0	474	0	0	9714	2751	1670	735
Romboutsia timonensis (SP36)	0	278	2151	0	0	0	0	0	0	1537	0	0	0	0	0	0	0
Limosilactobacillus caviae (SP38)	0	360	2014	198	0	0	0	0	0	606	0	21	0	0	0	0	0
Bacteroides acidifaciens (SP39)	0	490	320	2258	1499	0	14	0	0	202	0	324	0	0	22	0	0
Phocaeicola sartorii (SP43)	0	1782	1356	3176	3279	0	28	0	0	744	0	802	0	0	281	0	0
Lactobacillus intestinalis (SP47)	0	1541	874	1238	644	0	55	0	0	421	0	280	0	515	316	16	0
Lactobacillus johnsonii (SP52)	3015	6620	29793	2337	4806	13	1014	16	0	6796	13	224	0	317	1123	197	0
Enterococcus gallinarum (SP54)	0	0	0	0	0	6055	0	2	0	0	0	0	5276	0	0	0	0
Streptococcus acidominimus (SP60)	0	0	0	0	0	0	11462	0	0	0	112	0	0	9288	1792	1874	13416
Streptococcus danieliae (SP7)	0	0	9	33	0	0	11275	0	0	0	110712	7	0	1716	36740	25900	31576
Helicobacter typhlonius (SP70)	0	911	135	719	1265	0	0	0	0	76	0	175	0	0	0	0	0
Corynebacterium mastitidis (SP72)	0	0	0	0	0	0	152	0	0	0	1730	0	0	32	166	156	99
Bifidobacterium pseudolongum (SP77)	0	451	1403	1912	1517	0	223	0	0	581	0	2226	0	0	345	79	12
Streptococcus thoraltensis (SP79)	0	0	0	6	0	0	715	0	0	0	173	0	0	420	679	500	123
Alistipes senegalensis_nov_95.679% (SPN107)	0	1536	32	742	1197	0	0	0	0	116	0	459	0	0	0	0	0
Prevotella shahii_nov_91.210% (SPN109)	8	2604	8499	35483	21150	32	0	0	0	9685	0	18730	0	0	0	0	14
Muribacter muris_nov_97.342% (SPN12)	0	0	0	0	0	0	15356	0	0	0	0	7	0	7196	10187	6500	28083
Muribaculum intestinale_nov_90.229% (SPN120)	0	693	1060	947	873	0	5	0	0	179	0	224	0	7	66	0	0
Anaerotignum aminivorans_nov_94.150% (SPN13)	0	0	0	1954	3207	0	0	0	0	0	0	370	0	0	0	0	0
Kineothrix alysoides_nov_91.696% (SPN131)	0	33754	7385	0	0	0	59	0	0	3880	0	0	0	0	12	0	0
Culturomica massiliensis_nov_92.027% (SPN132)	0	0	0	1230	1757	0	0	0	0	0	0	1049	0	0	0	0	0
Mucispirillum schaedleri_nov_96.334% (SPN143)	0	359	0	1333	2204	0	3	0	0	18	0	52	0	0	25	0	0
Dubosiella newyorkensis_nov_91.039% (SPN154)	0	0	0	0	0	0	374	0	0	0	0	0	0	147	3205	110	15
Duncaniella freteri_nov_89.940% (SPN161)	4	1893	1980	2499	1731	0	23	0	0	955	0	445	0	59	246	0	0
Roseburia faecalis_nov_92.245% (SPN166)	0	134	34	1178	2360	0	0	0	0	17	0	12	0	0	0	0	0
Duncaniella freteri_nov_88.441% (SPN178)	0	55	437	1497	764	0	0	0	0	439	0	539	0	0	0	0	0
Lachnospira multipara_nov_90.470% (SPN188)	0	1445	153	389	1110	0	12	0	0	204	0	225	0	0	0	0	0
Duncaniella freteri_nov_88.993% (SPN199)	0	1070	189	1065	992	0	6	0	0	79	0	83	0	0	18	0	0
Duncaniella freteri_nov_87.400% (SPN211)	0	673	930	649	605	0	0	0	0	395	0	201	0	0	0	0	0
Prevotella shahii_nov_90.047% (SPN215)	0	1972	3308	1419	1734	0	56	0	0	1779	0	534	0	15	222	0	0
Muribaculum intestinale_nov_92.600% (SPN223)	0	1774	620	243	357	0	4	0	0	71	0	144	0	13	10	0	0
Duncaniella freteri_nov_90.320% (SPN233)	0	514	1079	631	471	0	10	0	0	283	0	110	0	7	0	0	0
Prevotellamassilia timonensis_nov_89.583% (SPN245)	7	2505	4586	11504	8404	11	89	0	0	1735	0	2815	0	0	328	0	0
Lacnoclostridium sp._str._L2_50_nov_91.228% (SPN246)	0	6	0	1798	812	0	0	0	0	0	0	48	0	0	31	0	0
Muribaculum intestinale_nov_91.307% (SPN25)	0	2139	1658	310	881	0	0	0	0	408	0	58	0	0	0	0	0
Duncaniella freteri_nov_88.267% (SPN258)	0	1645	485	126	258	0	4	0	0	72	0	20	0	0	55	0	0
Anaerocolumna cellulosilytica_nov_88.441% (SPN269)	0	11	59	361	1726	0	0	0	0	0	0	498	0	0	8	0	0
Sutterella sp._str._cont1.66_nov_96.048% (SPN276)	0	1053	3622	1469	1032	0	32	0	0	1075	0	883	0	0	206	0	0
Eubacterium xylanophilum_nov_91.543% (SPN281)	0	0	0	838	1385	0	66	0	0	0	0	103	0	10	233	0	0
Saccharibacteria_(TM7)_[G-3] bacterium HMT351 nov_96.662% (SPN293)	0	295	46	519	1009	0	5	0	0	84	0	603	0	6	28	0	0
Muribaculum intestinale_nov_90.871% (SPN303)	0	0	0	1024	1245	0	23	0	0	0	0	208	0	0	86	0	0
Muribaculum intestinale_nov_91.980% (SPN313)	0	10	9	0	0	0	405	0	0	0	0	0	0	0	2002	12	0
Odoribacter splanchnicus_nov_94.142% (SPN325)	0	908	63	511	758	0	0	0	0	89	0	102	0	0	4	0	0
Desulfovibrio desulfuricans_nov_92.558% (SPN336)	0	556	52	635	896	0	6	0	0	21	0	145	0	0	114	5	0
Bacteroides uniformis_nov_96.877% (SPN346)	0	953	393	235	665	0	0	0	0	80	0	26	0	0	55	0	0
Duncaniella freteri_nov_88.075% (SPN357)	0	11355	9251	1750	3125	0	191	0	0	3364	0	324	0	98	1066	0	0
Duncaniella freteri_nov_88.614% (SPN358)	0	203	70	842	1022	0	12	0	0	14	0	122	0	0	86	0	0
Blautia luti_nov_88.941% (SPN37)	0	69	17	2199	2784	0	0	0	0	21	0	218	0	0	0	0	0
Porphyromonas pasteri_nov_94.066% (SPN389)	0	0	0	0	0	0	5131	0	0	0	0	0	0	39	3429	2224	16912
Duncaniella freteri_nov_89.725% (SPN391)	0	2320	1319	2035	1819	0	33	0	0	422	0	730	0	38	127	9	0
Granulicatella species1_MOT32_nov_95.593% (SPN400)	0	0	0	0	0	0	10900	0	0	0	0	0	0	28	2057	1775	9746
Anaeromassilibacillus senegalensis_nov_91.831% (SPN413)	0	0	0	8559	10021	0	0	0	0	0	0	2531	0	0	0	0	0
Anaerotignum faecicola_nov_83.067% (SPN42)	0	57	5	3435	6019	0	0	0	0	13	0	517	0	0	0	0	0
Helicobacter mesocricetorum_nov_97.750% (SPN424)	4	1841	857	3553	1939	0	0	0	0	4218	0	6839	0	0	0	0	9
Mailhella massiliensis_nov_91.450% (SPN440)	0	5443	389	351	1514	12	120	0	0	62	0	48	0	0	579	5	0
Prevotella dentalis_nov_89.852% (SPN451)	0	575	551	2686	3479	0	0	0	0	141	0	941	0	0	0	0	0
Eisenbergiella massiliensis_nov_91.835% (SPN462)	0	38	0	2818	4272	0	0	0	0	10	0	238	0	0	17	0	0
Alistipes senegalensis_nov_95.729% (SPN47)	0	80	4	1830	2389	0	7	0	0	17	0	525	0	0	37	0	0
Bacteroidetes_[G-3] bacterium HMT365 nov_87.518% (SPN474)	0	1618	158	1750	2543	0	15	0	0	84	0	266	0	0	171	0	0
Duncaniella freteri_nov_91.442% (SPN486)	0	278	1986	1062	1234	0	10	0	0	776	0	217	0	3	67	0	0
Olsenella sp._Oral_Taxon_807_nov_93.324% (SPN59)	0	862	3000	78	60	0	115	0	0	180	0	8	0	0	364	22	0
Gloeobacter violaceus_nov_83.571% (SPN71)	0	1735	538	554	1251	0	0	0	0	65	0	225	0	0	0	0	0
Bergeyella porcorum_nov_93.906% (SPN83)	0	0	0	0	0	0	121	0	0	0	0	0	0	609	297	853	2359
Duncaniella freteri_nov_87.877% (SPN95)	0	369	316	1335	1164	0	110	0	0	89	0	192	0	32	534	18	0
Lactobacillus animalis (SPP10)	0	0	0	0	0	0	0	88	140007	0	0	0	0	0	0	0	0
Mammaliicoccus sciuri (SPP3)	281926	8	0	13	31	229038	0	10424	775	6	0	0	215958	0	0	0	0
Lactobacillus reuteri (SPP4)	0	697	1229	594	303	0	64	0	0	739	0	204	0	149	144	75	0
Muribacter muris (SPP6)	0	0	0	0	0	0	3890	0	0	0	0	8	0	13484	3842	11262	10934
multigenus multispecies_spp7_2 (SPP7)	550	0	0	0	0	1407	0	19781	0	0	0	0	0	0	0	0	0