taxon lfc_(Intercept) lfc_Age_HIV_Shedding_AgeADULT HIV-Neg SHEDDER se_(Intercept) se_Age_HIV_Shedding_AgeADULT HIV-Neg SHEDDER W_(Intercept) W_Age_HIV_Shedding_AgeADULT HIV-Neg SHEDDER p_(Intercept) p_Age_HIV_Shedding_AgeADULT HIV-Neg SHEDDER q_(Intercept) q_Age_HIV_Shedding_AgeADULT HIV-Neg SHEDDER diff_(Intercept) diff_Age_HIV_Shedding_AgeADULT HIV-Neg SHEDDER passed_ss_(Intercept) passed_ss_Age_HIV_Shedding_AgeADULT HIV-Neg SHEDDER Lachnospiraceae_[G-3] -0.833047526903459 1.51748392564851 0.309518614031073 0.670086469817366 -2.6914294945112 2.2646091124062 0.0167440014325382 0.0387831788302682 1 1 FALSE FALSE FALSE TRUE Butyrivibrio -0.0507253886341942 -0.0569124902607736 0.211941161600858 0.488500531694697 -0.239337126639533 -0.116504459193389 0.815245135379213 0.909352586883956 1 1 FALSE FALSE TRUE TRUE Oribacterium -0.481417808286496 0.954636635879155 0.269947965998429 0.541103843937748 -1.78337260851707 1.76423924275242 0.0935038300141173 0.0967715448368497 1 1 FALSE FALSE TRUE TRUE Fusobacterium -0.191550547978698 0.37490211526356 0.169696380691826 0.381249539954555 -1.12878393279678 0.983350997113985 0.275630052775026 0.340071848779962 1 1 FALSE FALSE TRUE TRUE Treponema -0.401265034315701 0.824441568159747 0.438768765085014 0.769279132926866 -0.914525067065688 1.07170665740406 0.374908228820848 0.300792770597342 1 1 FALSE FALSE TRUE TRUE Peptoniphilaceae_[G-1] NA NA NA NA NA NA 1 1 1 1 FALSE FALSE TRUE FALSE Peptidiphaga -0.119750955056972 0.257345056443849 0.50492152050068 0.640496420375108 -0.23716746107044 0.401789999533697 0.815735532981641 0.693505106554219 1 1 FALSE FALSE TRUE TRUE Peptostreptococcaceae_[G-9] -0.401191032900517 0.947343803872755 0.356817595684786 0.558309510221301 -1.12435888182748 1.69680757094259 0.284797917663499 0.117812113103498 1 1 FALSE FALSE TRUE TRUE Romboutsia 0.777235390557682 -0.511028422149568 1.73577375757149e-05 0.30144947281265 44777.4594567616 -1.69523740539819 4.98747924034166e-10 0.232116484851397 4.63835569351775e-08 1 TRUE FALSE FALSE TRUE Eikenella -0.174393426979834 0.340587873265832 0.317423891236543 0.515817721652473 -0.549402334841511 0.660287266158139 0.590315868095552 0.518463166976942 1 1 FALSE FALSE TRUE TRUE Granulicatella 0.0671698735953653 -0.142538727884568 0.286474520007141 0.49848831676239 0.234470673320933 -0.285941963114274 0.817593699366276 0.778591545045764 1 1 FALSE FALSE TRUE TRUE Peptostreptococcaceae_[G-6] -0.41055914305269 0.3185734952911 0.262028608431196 0.557547525824753 -1.56684854188544 0.571383569176188 0.192215438636763 0.598312882915788 1 1 FALSE FALSE TRUE TRUE Ruminococcaceae_[G-1] -0.464946504353859 0.921694028013881 0.362583876683619 0.552257833460818 -1.28231433953021 1.66895600599801 0.218000587769921 0.114572614728521 1 1 FALSE FALSE TRUE TRUE Centipeda -0.262870299517896 0.172401036397059 0.305875965293089 0.465492149728187 -0.859401618123265 0.370362929853336 0.408457619492934 0.718144711757103 1 1 FALSE FALSE TRUE TRUE Prevotella 0.0469046235866633 -0.102008227867163 0.339909058713196 0.518472290039623 0.137991684494175 -0.196747694769507 0.891968702809244 0.846502418638995 1 1 FALSE FALSE TRUE TRUE Bulleidia 0.343518448647803 -1.0806676300942 0.0652162040477138 0.44595136446076 5.26737876979894 -2.42328584732762 0.00622321126825056 0.0725050123154102 0.522749746533047 1 FALSE FALSE FALSE TRUE Absconditabacteria_(SR1)_[G-1] -0.0496825455196115 0.0773287794680581 0.399554495135961 0.69717148964825 -0.124344854392654 0.110917874032791 0.902693267325952 0.913151987807481 1 1 FALSE FALSE TRUE TRUE Shuttleworthia 0.123248721596817 -0.246007255502603 0.324902462384276 0.498653177661689 0.379340681792203 -0.493343402836001 0.711655764092203 0.631471328318387 1 1 FALSE FALSE TRUE TRUE Peptostreptococcaceae_[G-2] -1.47330714452429 1.80240723226185 0.0018881155214459 0.406458360400066 -780.305615726332 4.43442036839343 6.56103806247369e-14 0.00680005304021476 6.23298615935e-12 0.632404932739972 TRUE FALSE FALSE FALSE Cardiobacterium 0.21745157132908 -0.443102123351997 0.419426458789797 0.610477110078246 0.51844981825064 -0.725829217896809 0.611240069678593 0.478427052198759 1 1 FALSE FALSE TRUE TRUE Filifactor -0.467887400504926 0.895983517851485 0.214638227162743 0.456647796113771 -2.17988848813107 1.9620887814999 0.0571848731799968 0.0813707409603236 1 1 FALSE FALSE TRUE TRUE Veillonellaceae_[G-1] 0.241394745760679 -0.26846322874415 0.241645664568258 0.418225871767705 0.998961625038762 -0.641909663812627 0.347066436542218 0.538885679298467 1 1 FALSE FALSE TRUE TRUE Campylobacter -0.0223984816429252 0.0365979825920127 0.0846719864919568 0.373182421747399 -0.264532374530423 0.0980699530825846 0.794747103009795 0.923094827807331 1 1 FALSE FALSE TRUE TRUE Erysipelotrichaceae_[G-1] 0.480468031800379 -0.975587148638905 0.421632817881529 0.59515250561385 1.1395413531007 -1.63922211439347 0.318084068366626 0.17651003618748 1 1 FALSE FALSE TRUE TRUE Dialister -0.536685127294616 1.06517127389539 0.609277956810823 0.779869017684421 -0.880854331418481 1.36583355632987 0.39143658458807 0.19088462076329 1 1 FALSE FALSE TRUE TRUE Lachnospiraceae_[G-8] -0.663737379319692 0.964691313227091 0.229850778215674 0.4696406411574 -2.88768819697836 2.05410526407951 0.0233933254744879 0.079049941574968 1 1 FALSE FALSE FALSE TRUE Lautropia 0.57282203764394 -1.15384305598172 0.479133367119567 0.825222122695508 1.195537770804 -1.39822118705785 0.249296133632846 0.181128802115048 1 1 FALSE FALSE TRUE TRUE Veillonella -0.0758787472828475 0.143558513871857 0.271841251283322 0.587857933521554 -0.279128892045027 0.244206134995699 0.783721683447421 0.810175118678018 1 1 FALSE FALSE TRUE TRUE Bacteroidetes_[G-5] 0.107521047424683 -0.166373846006643 0.217258096288675 0.538965593220555 0.494900071672436 -0.308691033526809 0.629607642155877 0.762849964326981 1 1 FALSE FALSE TRUE TRUE Mitsuokella 0.516308539285014 -0.965402824209002 0.243429320900115 0.418769760271021 2.12097925334503 -2.30533079462139 0.0629373762395606 0.0465911804785653 1 1 FALSE FALSE TRUE FALSE Cryptobacterium 2.96578141245527 -4.25428946857134 1.73577375757312e-05 0.353810415307116 170862.210556858 -12.0242064238796 3.42537369567421e-11 0.00684557237590205 3.21985127393376e-09 0.632404932739972 TRUE FALSE FALSE FALSE Johnsonella -0.418370698992145 0.192430986694311 1.73577375757312e-05 0.394091487934181 -24102.8358198647 0.488290137153254 1.77778269872024e-17 0.65090312060379 1.70667139077143e-15 1 TRUE FALSE FALSE FALSE Bacteroidetes_[G-3] -1.00214287948556 0.923083743533486 0.0684469736403821 0.341459826861081 -14.6411568866548 2.70334508167203 0.000126608394256837 0.0539072477975389 0.0113947554831154 1 TRUE FALSE FALSE TRUE Corynebacterium 0.405464264635398 -0.819127509964632 0.38583752606503 0.670132306204827 1.05086788413385 -1.22233699581447 0.308933097994164 0.239282106905752 1 1 FALSE FALSE TRUE TRUE Scardovia 0.205358798219335 -0.409901296764036 0.138442229472249 0.511710411755222 1.48335373536078 -0.801041540972423 0.172131064622205 0.443739916428955 1 1 FALSE FALSE TRUE TRUE Haemophilus -0.0390543743460737 0.0699097679983095 0.263074582417871 0.557107404010532 -0.148453620973687 0.125487055987839 0.883839667834927 0.901701203491166 1 1 FALSE FALSE TRUE TRUE Weeksellaceae_[G-1] -0.116874986197864 0.232751350119 0.378167400782645 0.80591402145599 -0.309056216786489 0.288804194892284 0.76152999066488 0.776684161959656 1 1 FALSE FALSE TRUE TRUE Abiotrophia 0.00868299338841485 -0.0255649674706662 0.416930605694283 0.890364539800882 0.0208259918313162 -0.0287129218739814 0.983641972021762 0.977448647288934 1 1 FALSE FALSE TRUE TRUE Peptostreptococcaceae_[G-1] -0.555623970228981 0.92810656916112 0.402008729397268 0.650552865186109 -1.38211916706891 1.4266428123341 0.188590143983585 0.175602622327084 1 1 FALSE FALSE TRUE FALSE Capnocytophaga 0.24681776147988 -0.501834503653597 0.36079755997448 0.564052507881207 0.684089331139982 -0.889694658993141 0.503707269683219 0.38681172307223 1 1 FALSE FALSE TRUE TRUE Lancefieldella -0.50470894602828 0.941521053504984 0.341210169897028 0.599109509252542 -1.47917322095233 1.57153415020843 0.159787070293562 0.136910033431334 1 1 FALSE FALSE TRUE TRUE Kingella 0.472648378293572 -0.95349573728098 0.356471560208149 0.742564807675908 1.32590767694787 -1.28405726668524 0.20348930064193 0.217405136758097 1 1 FALSE FALSE TRUE TRUE Peptostreptococcaceae_[G-4] -0.554246040242124 0.503121299890304 0.0600946439229955 0.377783978525764 -9.22288583575481 1.33176981685048 0.000251631722418164 0.240416014347349 0.0223952232952166 1 TRUE FALSE FALSE TRUE Leptotrichia 0.104780872277724 -0.217760725249286 0.191687813995818 0.379443750782807 0.546622500896225 -0.573894614946317 0.592180231856286 0.574018826847189 1 1 FALSE FALSE TRUE TRUE Stomatobaculum -0.298563941616743 0.588928902539648 0.452436828773857 0.632894383142092 -0.659901941285102 0.930532673739068 0.518704046657492 0.365923691922461 1 1 FALSE FALSE TRUE TRUE Fannyhessea 3.07315938813 -5.18798854386726 1.73577375757149e-05 0.336033958709755 177048.384026132 -15.4388817242972 3.59573896063828e-06 0.0411773169120384 0.000327212245418083 1 TRUE FALSE FALSE FALSE Peptostreptococcaceae_[G-5] -0.874377692396823 0.913755894039781 0.240993483396941 0.530940242133401 -3.6282213115142 1.72101457287955 0.0109885125833307 0.136033600693957 0.890069519249786 1 FALSE FALSE FALSE TRUE Ruminococcaceae_[G-2] -0.290868618505939 0.448891096827882 0.392539886571445 0.590778845191676 -0.740991243072058 0.7598293345833 0.47094564148157 0.459961173328991 1 1 FALSE FALSE TRUE TRUE Desulfobulbus 0.0162948957647433 0.0135296555088171 0.0364049033143923 0.497129195008796 0.447601676730763 0.0272155722187623 0.670147294484158 0.979170417051066 1 1 FALSE FALSE TRUE TRUE Pseudoleptotrichia 0.291811168596566 -0.59182131788697 0.336060276324642 0.639725322423471 0.868329847811795 -0.925117854714542 0.398051544103158 0.368648179370516 1 1 FALSE FALSE TRUE TRUE Parvimonas -0.53159181555107 0.783482120453447 0.314608181931089 0.685267270664476 -1.68969482067542 1.1433234213765 0.116875780943988 0.275201152658135 1 1 FALSE FALSE TRUE TRUE Solobacterium -0.536494808171178 0.957328790265309 0.391892171652083 0.708774236821513 -1.36898577460606 1.35068226316808 0.191155704268284 0.196822709068206 1 1 FALSE FALSE TRUE TRUE Ottowia -0.0393416488006912 0.2081336599466 0.0913756249691931 0.356521703097003 -0.430548615278473 0.583789592999816 0.695854453551145 0.600355668833973 1 1 FALSE FALSE TRUE TRUE Anaeroglobus -0.0319734820190626 -0.0383117274500596 0.765690277525304 0.985102928158881 -0.0417577223553109 -0.0388910908240448 0.967513825231219 0.969742691043076 1 1 FALSE FALSE TRUE TRUE Bacteroidales_[G-2] -0.587113304862794 0.964462667954902 0.19695336309934 0.614047331916666 -2.98097628607978 1.57066502503066 0.0114649336103437 0.142241097503458 0.917194688827492 1 FALSE FALSE FALSE TRUE Limosilactobacillus -0.00484608675374569 -0.385606449297154 0.547532768804484 0.649783724601658 -0.00885077027321475 -0.593438146721119 0.993362030626475 0.584817642664997 1 1 FALSE FALSE TRUE TRUE Alloprevotella 0.115717982637875 -0.239634945969586 0.390238406273983 0.649669613052449 0.296531506836439 -0.368856632902484 0.770638813893752 0.717070041826492 1 1 FALSE FALSE TRUE TRUE Mycoplasma 0.134423023850543 -0.448909201533101 0.208484809528524 0.394789093819381 0.644761717434154 -1.13708612664584 0.537127828447221 0.288411733572523 1 1 FALSE FALSE TRUE TRUE Rothia 0.188227099482237 -0.38465317965831 0.348593294199083 0.643638805207085 0.539961905792542 -0.597622729621703 0.596659335824661 0.558455959623926 1 1 FALSE FALSE TRUE TRUE Pseudoramibacter -0.124221663953746 -0.117445816067336 0.214975196619872 0.414596978937378 -0.577841843649523 -0.283277066727194 0.588416981702119 0.788318692659464 1 1 FALSE FALSE TRUE TRUE Streptobacillus 0.404994484362977 -0.894033875954245 0.389091804071438 0.530997763318468 1.04087128056961 -1.68368670776876 0.374445023264746 0.190831141932506 1 1 FALSE FALSE TRUE TRUE Porphyromonas -0.0883626203271265 0.168526259960416 0.488031378433281 0.801474768013404 -0.181059301167879 0.210270200243656 0.858594710821241 0.836111131303751 1 1 FALSE FALSE TRUE TRUE Cloacibacterium 0.360778226846435 -3.6745260762162 0.514986923814033 0.6167135827561 0.700558033929257 -5.95823763082159 0.506189822375408 0.000565377019799179 1 0.0542761939007211 FALSE FALSE FALSE TRUE Pseudostreptobacillus 1.09958755030412 -1.35368707662084 0.272140417908467 0.52034581148658 4.04051540287544 -2.60151431363209 0.0049296487486025 0.0353471597377973 0.419020143631213 1 FALSE FALSE FALSE FALSE Phocaeicola -1.11269694695145 1.37178020113924 0.00757400746551276 0.47045340534689 -146.909935330533 2.91586836347323 1.28769331782627e-08 0.0434224503826868 1.18467785240017e-06 1 TRUE FALSE FALSE FALSE Peptostreptococcus -1.34690331890454 2.37143378782633 0.366103298083323 0.536285448039844 -3.67902536239374 4.42196184232495 0.00277901912738216 0.000689231615999425 0.241774664082248 0.0654770035199454 FALSE FALSE FALSE FALSE Catonella -0.573953352290812 1.02808381804684 0.187244525384877 0.444157022542045 -3.06526105962812 2.31468549605004 0.0078550545436209 0.0352097023379951 0.644114472576914 1 FALSE FALSE FALSE TRUE Megasphaera -0.821513126586515 1.53642820280163 0.494927689874985 0.627300779188905 -1.65986495278537 2.44926876192984 0.119165677288603 0.028083307852019 1 1 FALSE FALSE TRUE FALSE Lachnospiraceae_[G-2] 0.340692226330721 -0.597306667808399 0.3317363929116 0.694046208185562 1.0269968372795 -0.86061513017978 0.32184007251816 0.40394829796652 1 1 FALSE FALSE TRUE TRUE Riemerella 0.371316700585567 -0.689388502694147 0.301462558121108 0.688770153858649 1.23171747397034 -1.00089775788343 0.237015821709699 0.332749949884622 1 1 FALSE FALSE TRUE TRUE Streptococcus -0.0109852243794144 0.0137714680649905 0.211265562326322 0.402328446365663 -0.0519972316285347 0.0342294167598433 0.959174553097039 0.973117601869226 1 1 FALSE FALSE TRUE TRUE Morococcus_Neisseria 0.161472433368798 -0.331143847431434 0.420258660650424 0.678705886925564 0.38422154850751 -0.487904781453225 0.705872636427649 0.632235707270818 1 1 FALSE FALSE TRUE TRUE Kingella_Neisseria -0.211181579947363 0.41416417920089 0.459846540877745 0.67942031220567 -0.459243597971324 0.609584629367861 0.652236933380196 0.550696339659253 1 1 FALSE FALSE TRUE TRUE Peptoanaerobacter_Peptostreptococcaceae_[G-7] -0.387977205685108 0.824192732809646 0.359395454476055 0.548536443974234 -1.07952730301145 1.50253049157179 0.303454427891032 0.1611129536667 1 1 FALSE FALSE TRUE TRUE Mogibacterium -0.617290400387787 0.976628317277017 0.190983501613952 0.570966817098805 -3.23216610425103 1.7104817443498 0.00654923455867426 0.110918887068583 0.543586468369964 1 FALSE FALSE FALSE TRUE Escherichia_Pseudescherichia_Shigella -0.131186063778186 0.254173146862534 0.136992758730248 0.39750341929766 -0.957613124913441 0.639423799955298 0.352505190698267 0.531596324846126 1 1 FALSE FALSE TRUE TRUE Actinomyces 0.164913544972954 -0.338026070639745 0.303982383132519 0.581684781113122 0.542510204945201 -0.581115548515629 0.594943664095692 0.569258960192625 1 1 FALSE FALSE TRUE TRUE Parvimonas_Peptostreptococcus -0.559863290427119 0.720181312537971 0.294809744501664 0.807361185847741 -1.89906643477302 0.892018745961598 0.0840831762205775 0.391478391438432 1 1 FALSE FALSE TRUE TRUE Aggregatibacter -0.371004117308619 0.733809253923401 0.296673066530736 0.56675546870674 -1.25054869876495 1.29475460659931 0.229079168290701 0.213778548941115 1 1 FALSE FALSE TRUE TRUE Moraxella NA NA NA NA NA NA 1 1 1 1 FALSE FALSE TRUE TRUE Fretibacterium -0.813265024195861 1.31529591010065 0.161863885619976 0.54550779518461 -5.0243760124803 2.41114044879144 0.00102129274541765 0.0424326217003246 0.0898737615967529 1 FALSE FALSE FALSE FALSE Schaalia -0.760160876924559 1.51212277315528 0.696503182370082 0.879466359635998 -1.09139612878417 1.71936397178527 0.291261521871646 0.104830350173105 1 1 FALSE FALSE TRUE TRUE Lachnoanaerobaculum -0.156762332537363 0.305325684380888 0.177183405484231 0.478028005652853 -0.884746131326135 0.638719239815036 0.389396052985927 0.532043040055743 1 1 FALSE FALSE TRUE TRUE Eikenella_Neisseria 0.149594263493893 -0.276294616986887 0.274280237458774 0.587483026281476 0.545406642782193 -0.470302297473542 0.595466541236082 0.64657155673707 1 1 FALSE FALSE TRUE TRUE Eikenella_Kingella 0.232510640246998 -0.412970644132147 0.362969333648853 0.722857509225304 0.640579296078868 -0.571302973077962 0.533837719844098 0.578337617040147 1 1 FALSE FALSE TRUE TRUE Tannerella -0.332837696218492 0.657476411743148 0.278202515143913 0.4879805074372 -1.19638636640764 1.34734154689111 0.248974187979429 0.196642250887789 1 1 FALSE FALSE TRUE TRUE Hallella_Prevotella -0.34552439671435 0.677796388789367 0.154760092934411 0.494664910761607 -2.23264531677934 1.37021319694134 0.0670215785506244 0.219675994057998 1 1 FALSE FALSE TRUE TRUE Lactobacillus 2.44880257805029 -5.04267760492857 1.73577375757034e-05 0.29753822829497 141078.442243418 -16.947999031336 1 1 1 1 FALSE FALSE TRUE TRUE Selenomonas 0.00211118289307555 -0.0124213464799883 0.20082472853438 0.458713735936104 0.0105125644062012 -0.0270786451481333 0.991742306141491 0.978731877621806 1 1 FALSE FALSE TRUE TRUE Gemella -0.0108616104034661 0.0135242401130949 0.394803832995851 0.562410448163417 -0.0275114107202202 0.0240469218828688 0.978392065065701 0.98111253680504 1 1 FALSE FALSE TRUE TRUE Bifidobacterium 1.58028733956162 -2.76435010568229 0.311761426455942 0.603793820838551 5.06889950282205 -4.57830141726715 0.00387067298232955 0.00595667574327926 0.332877876480341 0.559927519868251 FALSE FALSE FALSE FALSE Kocuria NA NA NA NA NA NA 1 1 1 1 FALSE FALSE TRUE FALSE Centipeda_Selenomonas -0.208237752832029 0.222078660365325 0.232087754131005 0.482549572403488 -0.897237140372719 0.460219370331619 0.395790405382656 0.657609223015317 1 1 FALSE FALSE TRUE TRUE Neisseria -0.319120377617706 0.630041774541575 0.327817734730026 0.534375158701363 -0.973468924372003 1.17902519284897 0.344808786682894 0.255624378597802 1 1 FALSE FALSE TRUE TRUE Mesocricetibacter_Pasteurella_Rodentibacter 0.174785465983447 -0.29772514514764 0.301710366165409 0.508901428707001 0.579315414995132 -0.5850349956849 0.5730912291325 0.569361809250687 1 1 FALSE FALSE TRUE TRUE Peptococcus -0.279504117664097 0.537060883144213 0.28737931879818 0.639990499839322 -0.972596493140085 0.839170086554486 0.34995152688847 0.417778063439568 1 1 FALSE FALSE TRUE TRUE