taxon lfc_(Intercept) lfc_Age_HIV_Shedding_AgeADULT HIV-Pos SHEDDER se_(Intercept) se_Age_HIV_Shedding_AgeADULT HIV-Pos SHEDDER W_(Intercept) W_Age_HIV_Shedding_AgeADULT HIV-Pos SHEDDER p_(Intercept) p_Age_HIV_Shedding_AgeADULT HIV-Pos SHEDDER q_(Intercept) q_Age_HIV_Shedding_AgeADULT HIV-Pos SHEDDER diff_(Intercept) diff_Age_HIV_Shedding_AgeADULT HIV-Pos SHEDDER passed_ss_(Intercept) passed_ss_Age_HIV_Shedding_AgeADULT HIV-Pos SHEDDER Lachnospiraceae_[G-3] -0.701372071319158 0.683369584731443 0.387356338410459 0.57620466981472 -1.81066372683427 1.18598411385868 0.0933554635997834 0.256853130024003 1 1 FALSE FALSE TRUE TRUE Butyrivibrio -0.953479357765945 0.871948635633264 0.316254328366314 0.439821255647235 -3.01491322724773 1.98250681256893 0.00870429227555785 0.066047235191691 0.757273427973533 1 FALSE FALSE TRUE FALSE Oribacterium -0.403591534267208 0.468743144911372 0.310545780201196 0.488909044491112 -1.29962008823862 0.958753269535583 0.209279128248192 0.349725358456762 1 1 FALSE FALSE TRUE TRUE Fusobacterium -0.186319872100001 0.0885177361187603 0.287993493675159 0.352489191632761 -0.646958616051791 0.251121844924488 0.525398359370053 0.804415747857216 1 1 FALSE FALSE TRUE TRUE Treponema -0.0111802185113376 -0.217976657661401 0.399773380915242 0.573096612417619 -0.0279663905729331 -0.380348885228727 0.977980618226604 0.707905203801194 1 1 FALSE FALSE TRUE TRUE Peptoniphilaceae_[G-1] NA NA NA NA NA NA 1 1 1 1 FALSE FALSE TRUE TRUE Peptostreptococcaceae_[G-9] -0.616569193823122 0.571826973697691 0.416791923817093 0.583251452821895 -1.47932135578928 0.980412429203681 0.157346365698969 0.340630147854944 1 1 FALSE FALSE TRUE TRUE Romboutsia -2.07653427955228 1.65090978551898 NA 0.328538493939453 NA 5.02501172913766 1 0.000386979000349449 1 0.0363760260328483 FALSE TRUE FALSE TRUE Eikenella 0.407468958661132 -0.950612717713222 0.359336680599298 0.523498289299514 1.13394757802504 -1.8158850509048 0.270921790776374 0.0852028189426181 1 1 FALSE FALSE TRUE TRUE Granulicatella -0.0356729240344717 -0.175114422995915 0.34047249056579 0.399007561948819 -0.104774761611991 -0.438874947985015 0.917652703980649 0.665702255216379 1 1 FALSE FALSE TRUE TRUE Prevotella 0.117839049688384 -0.443760377010914 0.407873192825506 0.508668022725559 0.288910994302088 -0.872396842705277 0.775778105466341 0.393883390657372 1 1 FALSE FALSE TRUE TRUE Peptostreptococcaceae_[G-6] -1.35060727812457 1.80262201599866 0.295447394088737 0.360968439637364 -4.57139682104935 4.99384937311864 0.0446702851035002 0.0378373820210054 1 1 FALSE FALSE FALSE FALSE Ruminococcaceae_[G-1] 0.0667291021405505 -0.354317968802205 0.561227483199505 0.637680052274508 0.118898493281431 -0.555635961229157 0.906603880196267 0.584943711824665 1 1 FALSE FALSE TRUE TRUE Centipeda -0.0136437428194895 -0.267116279328124 0.32138690093418 0.479106366640173 -0.0424527035166371 -0.557530222779818 0.966737340812456 0.585969897560539 1 1 FALSE FALSE TRUE TRUE Weeksellaceae_[G-1] 0.162089540991375 -0.489894388831275 0.402763697356186 0.501444806286656 0.402443273947876 -0.976965725219261 0.692373080743399 0.342284835913666 1 1 FALSE FALSE TRUE TRUE Bulleidia -0.377513278113902 0.347583130913055 0.240393736461635 0.3932913335964 -1.57039565036317 0.883780295219392 0.150770543664203 0.399807271251824 1 1 FALSE FALSE TRUE TRUE Shuttleworthia -0.251778794028001 0.0173125353319013 0.496449464783079 0.643370022215933 -0.507158959548914 0.0269091420707984 0.618558793970174 0.978845566202746 1 1 FALSE FALSE TRUE TRUE Peptostreptococcaceae_[G-2] -1.20031832508109 0.796630703248135 0.169815562785755 0.375676771766457 -7.06836467394601 2.12052158429259 2.07649497720797e-05 0.0575179515461915 0.00199343517811965 1 TRUE FALSE TRUE FALSE Cardiobacterium 0.335886295504714 -0.774098395204593 0.441492592744295 0.534834654818161 0.760797125534683 -1.4473602041883 0.45720191958522 0.165985791317833 1 1 FALSE FALSE TRUE TRUE Filifactor -0.839397816202827 0.947785830498478 0.263287093486625 0.621194401958383 -3.18814646432895 1.52574753975644 0.00780231452461953 0.152988134442533 0.686603678166519 1 FALSE FALSE FALSE TRUE Schaalia -0.971090044837339 1.4618655384091 0.509929602863203 0.62654448761609 -1.90436099293857 2.33321905675252 0.072117568651001 0.0307786248505363 1 1 FALSE FALSE FALSE TRUE Clostridioides NA NA NA NA NA NA 1 1 1 1 FALSE FALSE FALSE FALSE Veillonellaceae_[G-1] -0.546379455997165 0.222104324758687 0.367096276427707 0.605052053610081 -1.4883819070956 0.367083002914356 0.158827088786326 0.719046291786664 1 1 FALSE FALSE FALSE FALSE Campylobacter -0.245203026366353 0.191563256084876 0.302154297809562 0.361001339922393 -0.811515931244163 0.530644169149228 0.427119444704932 0.601813352815736 1 1 FALSE FALSE TRUE TRUE Erysipelotrichaceae_[G-1] -0.0581783380846996 -0.379839681717979 0.280603798775239 0.452544924689027 -0.207332681662303 -0.839341380259631 0.839911237616488 0.420890044383107 1 1 FALSE FALSE TRUE TRUE Stomatobaculum -0.425415928555808 0.506935834916423 0.455315194916333 0.585588209100709 -0.934332816707295 0.865686547369058 0.36185568440393 0.397461751541338 1 1 FALSE FALSE TRUE TRUE Dialister -0.266040164867389 0.144855292756715 0.275513313888749 0.442557478178253 -0.96561636572966 0.327314077604107 0.347031492820182 0.747206296128101 1 1 FALSE FALSE TRUE TRUE Lachnospiraceae_[G-8] -0.395096521824511 0.0977691916173613 0.193148069982904 0.487677258888932 -2.04556287753475 0.200479292063172 0.0711224172645556 0.845562851303944 1 1 FALSE FALSE TRUE TRUE Lautropia 1.35956645631719 -2.61678333861132 0.453800141306199 0.859113507481643 2.99595864471057 -3.04591106509547 0.00742788373931766 0.00664907493552036 0.661081652799272 0.598416744196833 FALSE FALSE FALSE TRUE Peptidiphaga 0.423778533302052 -1.03389089542384 0.625001057232184 0.726106216860038 0.678044506322523 -1.42388382225231 0.506868362524677 0.172576409537264 1 1 FALSE FALSE TRUE TRUE Mitsuokella 0.972465172082521 -2.13543674977181 0.344034047216675 0.396512847483435 2.82665387321405 -5.38554239370774 0.0179546409458066 0.000307661970512534 1 0.0292278871986907 FALSE TRUE FALSE FALSE Cryptobacterium -0.613182934758493 0.484358033572622 0.331246788328536 0.451184611501154 -1.85113624150924 1.07352516292853 0.0869965111555722 0.302558897137404 1 1 FALSE FALSE TRUE TRUE Johnsonella -1.53177974535748 1.28639419217631 0.164185957970482 0.25899427792754 -9.32954172385962 4.96688267582581 0.000734780042809196 0.00766846489407733 0.0698041040668736 0.682493375572883 FALSE FALSE FALSE FALSE Bacteroidetes_[G-3] -0.446535208446501 0.0246674960803885 0.19761121609252 0.346607920940548 -2.25966530279049 0.071168298789743 0.058360182001255 0.945254436090639 1 1 FALSE FALSE TRUE TRUE Lachnoanaerobaculum -0.389850081180605 0.444695602009816 0.35122263663131 0.443285457568056 -1.1099799401308 1.00318112046693 0.280858796872608 0.328379347881475 1 1 FALSE FALSE TRUE TRUE Corynebacterium 0.54302382569968 -1.18783373503068 0.521793365956215 0.63017568890813 1.04068748498663 -1.88492472168956 0.311083045515163 0.0748295905464326 1 1 FALSE FALSE TRUE FALSE Scardovia 0.622090357401065 -1.30001214347489 0.455417048657851 0.533688939316447 1.36597951094368 -2.43589860629293 0.192077303235145 0.0278003930505224 1 1 FALSE FALSE TRUE FALSE Haemophilus 0.248193851965981 -0.671881280996708 0.432267140131879 0.521785696948473 0.574167751659912 -1.28765752860998 0.57258977125438 0.213329081404873 1 1 FALSE FALSE TRUE TRUE Abiotrophia 0.225630448430336 -0.674762772905749 0.632118935273581 0.721014588360599 0.356943030559088 -0.935851761945602 0.725798528625836 0.363260809765505 1 1 FALSE FALSE TRUE TRUE Peptostreptococcaceae_[G-1] -0.892017699282377 1.16824152723804 0.315297930083521 0.534958316801554 -2.82912640449649 2.18379916817221 0.0111196987108424 0.0424555932028131 0.942210867157839 1 FALSE FALSE FALSE TRUE Lancefieldella -0.753525563546576 1.08112769615027 0.29853178533655 0.426742491773481 -2.52410497159319 2.53344280682538 0.0206616711778667 0.0202574810253407 1 1 FALSE FALSE TRUE TRUE Kingella 1.07245704811208 -2.11434187425238 0.380415297329588 0.512065282030711 2.81917434877209 -4.12904750321576 0.0109559403157888 0.000570620486044527 0.942210867157839 0.053067705202141 FALSE FALSE TRUE TRUE Peptostreptococcaceae_[G-4] -0.0718486586009492 -0.825181914639136 NA 0.315914836589278 NA -2.6120391291149 1 0.0592928271289684 1 1 FALSE FALSE TRUE TRUE Leptotrichia 0.34042373069165 -0.83328356876663 0.401446463741486 0.457220512798811 0.847992849454688 -1.82249821572047 0.406998323165593 0.08415741286816 1 1 FALSE FALSE TRUE FALSE Fannyhessea NA NA NA NA NA NA 1 1 1 1 FALSE FALSE TRUE TRUE Bacteroidetes_[G-5] 0.332306344952243 -0.896742038092315 0.273477328695835 0.398899349361936 1.21511478314108 -2.24804086425989 0.252232571534164 0.0483401337690563 1 1 FALSE FALSE TRUE FALSE Peptostreptococcaceae_[G-5] -1.27884868920864 1.57614291909176 0.290322643084399 0.425444594500352 -4.40492231546979 3.70469607433327 0.00454417337489391 0.0100324045208433 0.413519777115346 0.882851597834208 FALSE FALSE FALSE FALSE Ruminococcaceae_[G-2] -0.282593173871805 0.172443641097409 0.498007693161384 0.623334370578162 -0.567447406440422 0.276647092213866 0.57741974535981 0.785202764177486 1 1 FALSE FALSE TRUE TRUE Desulfobulbus NA NA NA NA NA NA 1 1 1 1 FALSE FALSE TRUE FALSE Fretibacterium -0.658945610686301 0.358945313589743 0.222605951770157 0.511799323830857 -2.96014372233259 0.701339952743607 0.0110542613840886 0.495454788880064 0.942210867157839 1 FALSE FALSE FALSE FALSE Pseudoleptotrichia 0.176975054569267 -0.547248385552459 0.398407354436079 0.562752753831748 0.444206294383708 -0.972449058358718 0.661911470722035 0.343045632491151 1 1 FALSE FALSE TRUE TRUE Capnocytophaga 0.388059806116379 -0.916646700759904 0.378503252657478 0.482375701879867 1.02524827301167 -1.90027544336839 0.318122852517967 0.0726803206519975 1 1 FALSE FALSE TRUE FALSE Parvimonas -0.837732917137932 1.07776689033063 0.533037928706888 0.740767964532215 -1.57161971413594 1.45493183011933 0.13345081956136 0.162905985549039 1 1 FALSE FALSE TRUE TRUE Solobacterium -0.727127164441149 0.726967437632575 0.235601883162187 0.458387200059288 -3.08625361852731 1.58592438344384 0.00669892032899227 0.131181008687584 0.602902829609304 1 FALSE FALSE FALSE FALSE Ottowia -0.14722474386763 -0.437080482059852 0.329898698799965 0.490826919789834 -0.446272581259558 -0.890498186707047 0.668878541788906 0.402765652731519 1 1 FALSE FALSE TRUE TRUE Anaeroglobus -0.0627180419467811 -0.295187521607719 0.327274668519131 0.455974219617759 -0.191637324790736 -0.647377656252525 0.851230727022879 0.529577842394336 1 1 FALSE FALSE TRUE TRUE Bacteroidales_[G-2] -0.01977551235992 -0.287375092646543 0.455527353911004 0.635087582679082 -0.0434123487648636 -0.452496790181705 0.965850794871136 0.656317294647508 1 1 FALSE FALSE TRUE TRUE Limosilactobacillus -0.628775660275499 0.166510623028096 NA 0.42464462951478 NA 0.392117576568341 1 0.708520821487667 1 1 FALSE FALSE TRUE TRUE Alloprevotella 0.274513563942456 -0.71794077695554 0.452440438943896 0.554849486158111 0.606739672924101 -1.29393789643153 0.551205608740887 0.211195288310576 1 1 FALSE FALSE TRUE TRUE Mycoplasma -0.323875748524692 0.196736412613683 0.318738166409598 0.421306756417005 -1.01611850307406 0.466967143576866 0.336109370422913 0.651621610318184 1 1 FALSE FALSE TRUE TRUE Rothia -0.202146184632124 0.116213783049975 0.386106630880045 0.484672342992662 -0.523550150307899 0.239778037121739 0.606644766346864 0.813070127543184 1 1 FALSE FALSE TRUE TRUE Pseudoramibacter 0.697709580459608 -1.39387505164935 NA 0.435345291756163 NA -3.20176898210274 1 0.0125788672943513 1 1 FALSE FALSE FALSE FALSE Streptobacillus -1.87722474661165 1.82123088586297 NA 0.242438798269757 NA 7.51212635461312 1 0.0842502951803636 1 1 FALSE FALSE TRUE TRUE Cloacibacterium 0.127805607762634 0.125693516479629 0.58247883766664 0.671424247300814 0.219416740142205 0.187204315281922 0.83500154732243 0.858859857859703 1 1 FALSE FALSE TRUE FALSE Pseudostreptobacillus 0.0830504302282714 0.256362453895189 0.359377881219793 0.456402214385055 0.231094996571251 0.561702914260848 0.828580476069753 0.604299225936029 1 1 FALSE FALSE TRUE FALSE Phocaeicola NA NA NA NA NA NA 1 1 1 1 FALSE FALSE FALSE FALSE Peptostreptococcus -1.22015657203308 1.53066769429628 0.344018000829477 0.539779659631056 -3.54678118322618 2.83572688778696 0.00247930226120835 0.0114130006430376 0.230575110292377 0.992931055944271 FALSE FALSE TRUE TRUE Catonella -0.397923861207637 0.458824717057122 0.405217927347181 0.453661238139095 -0.981999645999634 1.01138179435212 0.338440053372785 0.324541026157522 1 1 FALSE FALSE TRUE TRUE Megasphaera -0.176095332379629 0.0706247916081097 0.544466485360596 0.680542957953268 -0.323427313001649 0.103777124989308 0.7499043967371 0.918433820729863 1 1 FALSE FALSE TRUE TRUE Lachnospiraceae_[G-2] 0.122816317912352 -0.500235461240562 0.418273396681485 0.585944319664429 0.293626893048319 -0.853725250766228 0.772401722575323 0.404475873316088 1 1 FALSE FALSE TRUE TRUE Riemerella 0.0990253604077855 -0.410836420769866 0.461582059736209 0.564844871749099 0.21453468201164 -0.727343809456337 0.832415871849861 0.475883073923151 1 1 FALSE FALSE TRUE TRUE Absconditabacteria_(SR1)_[G-1] -0.0840281226133024 -0.241068266493342 0.375287624654438 0.6211140779187 -0.223903260041348 -0.388122367635171 0.82606704231996 0.703763190021454 1 1 FALSE FALSE TRUE TRUE Streptococcus -0.102156778540868 -0.0587676776097206 0.591703955671003 0.624574487803132 -0.172648463073093 -0.0940923440796133 0.864753597702785 0.926020986624606 1 1 FALSE FALSE TRUE TRUE Morococcus_Neisseria 0.677918437766577 -1.42389930614775 0.463332431479331 0.681447018744622 1.46313616683839 -2.08952312796216 0.159777150535524 0.0503473155873145 1 1 FALSE FALSE TRUE FALSE Kingella_Neisseria 0.0138703684491671 -0.261815184842284 0.480496078523196 0.759531322227559 0.0288667672206558 -0.344706238150167 0.977271909263442 0.734101529085671 1 1 FALSE FALSE TRUE TRUE Peptoanaerobacter_Peptostreptococcaceae_[G-7] 0.0488089542140199 -0.420259273772941 0.445626687983534 0.64465741301727 0.109528795133166 -0.651911023261098 0.914065627497764 0.523175510575341 1 1 FALSE FALSE TRUE TRUE Mogibacterium -1.0904735946925 1.67078675065564 0.302759731508287 0.474559839557225 -3.60177884046861 3.52070826771714 0.00190073847179469 0.00228535246678643 0.178669416348701 0.210252426944352 FALSE FALSE TRUE TRUE Escherichia_Pseudescherichia_Shigella 0.684088084465213 -2.81886823838337 0.2846775941084 0.319785366874719 2.40302749012529 -8.81487563340478 0.0429732223292409 2.15849242170366e-05 1 0.00207215272483551 FALSE TRUE TRUE TRUE Actinomyces 0.27699431843727 -0.722282097321463 0.492461586183435 0.624791511404391 0.562468883276701 -1.15603698855949 0.580373079077039 0.261996190179193 1 1 FALSE FALSE TRUE TRUE Parvimonas_Peptostreptococcus -0.712629457532141 0.963513973220238 0.435438067039731 0.613702565701405 -1.63658051850372 1.57000153994636 0.122521815796264 0.137265714269648 1 1 FALSE FALSE TRUE TRUE Porphyromonas -0.0421257022676289 -0.163822061087891 0.452028393032283 0.545810986458272 -0.0931926023165105 -0.300144308473746 0.926726235257846 0.767326270892774 1 1 FALSE FALSE TRUE TRUE Aggregatibacter 0.508924317214952 -1.12815959518241 0.416510490076021 0.65351102742799 1.22187634967384 -1.72630536874409 0.236697951231493 0.100517477018689 1 1 FALSE FALSE TRUE TRUE Eikenella_Neisseria 0.695366723646668 -1.54404312480003 0.289180933209066 0.460568211929567 2.40460778630916 -3.35247436711102 0.0349464322854747 0.00644926415988147 1 0.586883038549214 FALSE FALSE FALSE FALSE Eikenella_Kingella 0.389120703897546 -1.06476959220441 0.334731658893968 0.400811265819994 1.16248551207643 -2.65653608819119 0.278541100054423 0.0289606575212338 1 1 FALSE FALSE TRUE FALSE Tannerella -0.0606720975301463 -0.131365869378486 0.413168171811263 0.528523775279512 -0.146846010098429 -0.248552431362264 0.884800525914577 0.806373772595534 1 1 FALSE FALSE TRUE TRUE Hallella_Prevotella -1.08932163061085 1.07477274189783 0.2720911737077 0.492925959306598 -4.00351696737165 2.18039387377716 0.00250408889177966 0.0542093842506746 0.230575110292377 1 FALSE FALSE FALSE TRUE Lactobacillus NA NA NA NA NA NA 1 1 1 1 FALSE FALSE TRUE TRUE Selenomonas -0.0375631203292187 -0.171806579480109 0.345237265451158 0.495917020220867 -0.108803782465751 -0.346442191888457 0.914498995015018 0.732817558978058 1 1 FALSE FALSE TRUE TRUE Gemella 0.0141443777993377 -0.262294701205083 0.384206399909333 0.449253849287072 0.0368145293849231 -0.583845194918913 0.971016936303415 0.566192035934836 1 1 FALSE FALSE TRUE TRUE Bifidobacterium -1.27595862881317 0.899876106069 0.383746543409025 0.599026550365698 -3.32500357521959 1.50223075341091 0.0126776668729169 0.176735978017004 1 1 FALSE FALSE FALSE TRUE Veillonella -0.0332948088355314 -0.179276124594062 0.338034560215194 0.416276715111147 -0.0984952805249729 -0.430665752097604 0.922570730086696 0.671557361432505 1 1 FALSE FALSE TRUE TRUE Kocuria NA NA NA NA NA NA 1 1 1 1 FALSE FALSE FALSE FALSE Centipeda_Selenomonas 0.106227709560224 -0.595489721455312 0.458970881847286 0.587365071644248 0.231447601060603 -1.01383236798252 0.820315638799894 0.327864654742655 1 1 FALSE FALSE TRUE TRUE Neisseria -0.208935250244312 0.128094647871303 0.411655195593383 0.536279439577457 -0.507549163671165 0.238858025159851 0.617610537153615 0.813773119210411 1 1 FALSE FALSE TRUE TRUE Mesocricetibacter_Pasteurella_Rodentibacter 0.127123401757352 -0.620256210873871 0.232793439125094 0.429438537473114 0.546078112145765 -1.44434222071349 0.595913616066332 0.176516911835307 1 1 FALSE FALSE TRUE TRUE Peptococcus 0.352460827593641 -1.02292508705358 0.287289871214519 0.480386988838641 1.22684738624307 -2.12937717053194 0.240112919936094 0.0514533418180225 1 1 FALSE FALSE TRUE TRUE