taxon lfc_(Intercept) lfc_Age_HIV_Shedding_AgeADULT HIV-Pos NON-SHEDDER se_(Intercept) se_Age_HIV_Shedding_AgeADULT HIV-Pos NON-SHEDDER W_(Intercept) W_Age_HIV_Shedding_AgeADULT HIV-Pos NON-SHEDDER p_(Intercept) p_Age_HIV_Shedding_AgeADULT HIV-Pos NON-SHEDDER q_(Intercept) q_Age_HIV_Shedding_AgeADULT HIV-Pos NON-SHEDDER diff_(Intercept) diff_Age_HIV_Shedding_AgeADULT HIV-Pos NON-SHEDDER passed_ss_(Intercept) passed_ss_Age_HIV_Shedding_AgeADULT HIV-Pos NON-SHEDDER Treponema 0.324421081242998 -0.544589271469031 0.385483825911169 0.581475844291087 0.841594535065546 -0.93656387761554 0.408680498150087 0.358713702902587 1 1 FALSE FALSE TRUE TRUE Lachnospiraceae_[G-3] -0.879480711000065 1.04030028172956 0.371753406220949 0.555488764294692 -2.36576369249822 1.8727656589966 0.0282053362558429 0.0757937810321486 1 1 FALSE FALSE FALSE TRUE Butyrivibrio -0.330250639602175 0.245867748137607 0.29320634413291 0.425838465954704 -1.12634206663848 0.577373271309313 0.274046484245897 0.570466504984003 1 1 FALSE FALSE TRUE TRUE Oribacterium -0.0964709276717202 0.124130340052831 0.286699755067877 0.399102050586415 -0.336487652906716 0.311024059812375 0.73931135023356 0.758360928639804 1 1 FALSE FALSE TRUE TRUE Fusobacterium 0.151163960713831 -0.247321992525496 0.260658807568164 0.427968429747519 0.579930377661613 -0.577897749774216 0.567151989711683 0.568502422187021 1 1 FALSE FALSE TRUE TRUE Peptoniphilaceae_[G-1] NA NA NA NA NA NA 1 1 1 1 FALSE FALSE TRUE TRUE Peptostreptococcaceae_[G-9] -0.589909444747019 0.703503397810111 0.403652384639446 0.473255450180809 -1.46142935653395 1.48651937878652 0.160239803158073 0.153548097041821 1 1 FALSE FALSE TRUE TRUE Romboutsia -2.49073989225583 2.44614107513966 0.0803466400459622 0.32643126165741 -30.9999259562193 7.49358705020993 2.11197955897866e-16 8.7876193591824e-07 2.00638058102973e-14 8.34823839122328e-05 TRUE TRUE TRUE TRUE Eikenella 0.0364934033166428 -0.0753161564297143 0.341179347340778 0.447905247531636 0.106962521621194 -0.168151984922647 0.915672455323567 0.867816674625622 1 1 FALSE FALSE TRUE TRUE Bacteroidetes_[G-5] 0.481231509552338 -0.917687106486685 0.243636709386301 0.353771779881299 1.97520115406466 -2.59400878949304 0.0698698425732279 0.0222575233050269 1 1 FALSE FALSE TRUE FALSE Granulicatella -0.219109366822448 0.308087998778921 0.320412102409255 0.421082491803005 -0.683836113476714 0.731657109417538 0.500368599569885 0.471181210840336 1 1 FALSE FALSE TRUE TRUE Prevotella 0.1522183605307 -0.2489035922508 0.393732276806531 0.525824898835524 0.386603713988873 -0.473358322898012 0.702320688924302 0.640064875672197 1 1 FALSE FALSE TRUE TRUE Peptostreptococcaceae_[G-6] -2.0079334142165 2.03648148412212 0.2692404490536 0.465834134525673 -7.45777026176613 4.37168797472458 0.00014228109035006 0.00326733886088282 0.0123784548604553 0.280991142035922 TRUE FALSE FALSE FALSE Ruminococcaceae_[G-1] -0.519271570769225 0.732617483322918 0.555295344346155 0.613211920918169 -0.935126822251056 1.1947215282866 0.359438025231455 0.244370998196328 1 1 FALSE FALSE TRUE TRUE Centipeda 0.759258414816363 -1.16412977824085 0.299228242198409 0.392125569824197 2.53738888160471 -2.96876783312746 0.0196003603439987 0.00759059198103999 1 0.61483795046424 FALSE FALSE FALSE FALSE Capnocytophaga 0.0978737319006189 -0.167386649305679 0.362006087511766 0.441700841814047 0.270364878594584 -0.378959316940011 0.789099052835897 0.707917591294913 1 1 FALSE FALSE TRUE TRUE Bulleidia 0.457962514317265 -0.852008198837717 0.202924370308907 0.331249300001713 2.2568137755959 -2.57210565828611 0.0405296097198159 0.0221465019347537 1 1 FALSE FALSE FALSE FALSE Shuttleworthia 0.20386695460742 -0.40750000126783 0.487852648996683 0.575868547634627 0.417886333151398 -0.707626771667999 0.680482648019457 0.487341993493358 1 1 FALSE FALSE TRUE TRUE Peptostreptococcaceae_[G-2] -0.938489669038406 0.740060221398941 0.0939151917117594 0.330780515938484 -9.99294844564422 2.23731503440962 9.42336646236548e-08 0.0420469563350984 8.7637308099999e-06 1 TRUE FALSE FALSE TRUE Cardiobacterium 0.266544112611248 -0.448773560466594 0.429811789321415 0.520787953257333 0.620141464784079 -0.861720317568185 0.541008799618336 0.397369801952924 1 1 FALSE FALSE TRUE TRUE Filifactor -0.724011157679553 0.872090751589723 0.231288233538983 0.547209191983358 -3.13034150765617 1.59370632724358 0.0068773234156304 0.131851511777477 0.50892193275665 1 FALSE FALSE FALSE TRUE Clostridioides NA NA NA NA NA NA 1 1 1 1 FALSE FALSE FALSE FALSE Veillonellaceae_[G-1] -0.375354089778741 0.273859221100037 0.349727077656543 0.45118036595999 -1.07327717457258 0.606983906574345 0.304255915250821 0.555172583289979 1 1 FALSE FALSE TRUE TRUE Campylobacter 0.0556642387515264 -0.10407240958204 0.276952932934165 0.3355520887292 0.200988081844067 -0.310152769354476 0.842334159320331 0.759015592112621 1 1 FALSE FALSE TRUE TRUE Erysipelotrichaceae_[G-1] 0.092949756133267 -0.459455980685299 0.25203493742681 0.339824443179577 0.368797108378117 -1.35203923645511 0.718215529982463 0.199417223276281 1 1 FALSE FALSE TRUE TRUE Dialister 0.139390159763894 -0.252662668733373 0.246003885577825 0.413730587859849 0.566617715962038 -0.610693712641236 0.576235096059811 0.54714281821089 1 1 FALSE FALSE TRUE TRUE Lachnospiraceae_[G-8] -0.548287995753136 0.362066278527394 0.136689435758761 0.425439023954666 -4.0111951059685 0.851041531549713 0.00148054698221392 0.410148783456757 0.122885399523755 1 FALSE FALSE FALSE TRUE Lautropia 1.40420135271198 -2.12687808052273 0.442795685391991 0.577325802856281 3.17121733349523 -3.68401701431001 0.00398717703545375 0.00111000122213613 0.303025454694485 0.0999001099922519 FALSE FALSE TRUE TRUE Peptidiphaga 0.762687740090033 -1.18278802610028 0.62133939965291 0.700181946237017 1.22748974315178 -1.68925810277876 0.232054215449685 0.104682636620464 1 1 FALSE FALSE TRUE TRUE Mitsuokella 1.25183811164953 -2.13268572005945 0.324357858548982 0.409634632023156 3.85943512282897 -5.20631204819346 0.0026558946725159 0.000291615432731143 0.209815679128756 0.0268286198112652 FALSE TRUE FALSE TRUE Cryptobacterium 0.177063040774078 -0.499724563667574 0.310208207908835 0.384609379553218 0.570787736300367 -1.29930415178143 0.58211268283725 0.22613489207457 1 1 FALSE FALSE TRUE TRUE Johnsonella -1.58484590189678 1.36225470402435 0.0803466400459622 0.307884244500466 -19.7251048829195 4.42456776648175 4.54189660323557e-08 0.00221297187294153 4.26938280704143e-06 0.194741524818855 TRUE FALSE FALSE FALSE Bacteroidetes_[G-3] -0.482526969125825 0.151671274412849 0.143772629528055 0.308233205648679 -3.3561810110155 0.492066628881388 0.00844021824431448 0.634451386945372 0.616135931834957 1 FALSE FALSE FALSE TRUE Corynebacterium 0.408408205378484 -0.633188359522475 0.514502768196446 0.601698193085945 0.793792046659206 -1.05233548446444 0.434786735219075 0.302711364312801 1 1 FALSE FALSE TRUE TRUE Scardovia -0.179219934626162 0.42723792310093 0.44460536990189 0.560702108689921 -0.403098897941133 0.761969531556016 0.692562566066465 0.457892541494858 1 1 FALSE FALSE TRUE TRUE Haemophilus -0.0672380079490857 0.0802809604688784 0.419728885562815 0.516040559297421 -0.160193901972999 0.155571028328043 0.874015680289905 0.877620498730542 1 1 FALSE FALSE TRUE TRUE Weeksellaceae_[G-1] -0.245466384451217 0.352865404314212 0.388235175956584 0.482193186045524 -0.6322620917757 0.731792597917172 0.533732036151434 0.472019218468315 1 1 FALSE FALSE TRUE TRUE Abiotrophia -0.395936637395063 0.490493172201116 0.628672261007663 0.735745738780307 -0.629798166632068 0.666661247694398 0.534777084185999 0.511347178214329 1 1 FALSE FALSE TRUE TRUE Peptostreptococcaceae_[G-1] -0.971967289088746 1.3392042166783 0.292275761385839 0.52597298644386 -3.32551452258688 2.54614638240787 0.00282991559869485 0.0177287935660903 0.220733416698198 1 FALSE FALSE TRUE TRUE Lancefieldella -0.510225724710766 0.744762535611398 0.27293571760007 0.417932175504158 -1.86939887969662 1.78201770350172 0.0733249697249535 0.0868981517954975 1 1 FALSE FALSE TRUE TRUE Kingella 1.12079956024999 -1.70177539182973 0.364284922413785 0.533618629081343 3.07671136324684 -3.18912290367268 0.00501805482856541 0.00381630294485365 0.376354112142406 0.32438575031256 FALSE FALSE TRUE TRUE Peptostreptococcaceae_[G-4] 0.0367767219241727 -0.449373056174907 0.0803466400459623 0.344511630553597 0.457725698338283 -1.30437702626413 0.657999346552904 0.22447336752299 1 1 FALSE FALSE TRUE FALSE Leptotrichia 0.441147253006544 -0.682296930964567 0.387122615276252 0.456542206049648 1.13955433136279 -1.49448818077154 0.265273193796937 0.147564273297189 1 1 FALSE FALSE TRUE TRUE Stomatobaculum -0.551856021257358 0.807207980431287 0.444400096593134 0.542515011566805 -1.24179995793881 1.48789980594277 0.225834822997102 0.149283341432783 1 1 FALSE FALSE TRUE TRUE Peptostreptococcaceae_[G-5] -1.13119443556987 1.11195248012722 0.263285198992013 0.478555556355347 -4.29646041593165 2.32355985707446 0.00157016018615412 0.0425141677291568 0.127182975078484 1 FALSE FALSE FALSE FALSE Ruminococcaceae_[G-2] -0.12015663165134 0.0669021666508915 0.48947695997311 0.574387025949108 -0.245479647618024 0.116475762209885 0.808360579568406 0.908332224210425 1 1 FALSE FALSE TRUE TRUE Desulfobulbus NA NA NA NA NA NA 1 1 1 1 FALSE FALSE TRUE TRUE Pseudoleptotrichia 0.994317175683324 -1.51205181497974 0.383677218664528 0.594814836749413 2.59154603743287 -2.54205463878962 0.0157254428835138 0.0175946354614441 1 1 FALSE FALSE FALSE TRUE Parvimonas -0.642076615584407 0.862695466060919 0.526122754419821 0.642945742802134 -1.22039316906651 1.34178579719815 0.234171706690241 0.19222362674772 1 1 FALSE FALSE TRUE FALSE Absconditabacteria_(SR1)_[G-1] -1.16938619267227 1.5505459605183 0.35875311136249 0.570307939024339 -3.2595848109334 2.7187872628442 0.0039235973102912 0.0132224704663202 0.302116992892422 1 FALSE FALSE FALSE FALSE Solobacterium -0.866678894274247 1.07813289968289 0.196780240635389 0.42559036552431 -4.40429837607579 2.53326434764254 0.00020551590971378 0.0185761947184247 0.0176743682353851 1 TRUE FALSE TRUE TRUE Ottowia -0.353296568443784 0.0949977348145728 0.308767089473325 0.449041438632961 -1.14421705061383 0.211556722033893 0.274844734064373 0.836003281880301 1 1 FALSE FALSE TRUE TRUE Anaeroglobus 0.269452505133649 -0.429328264999049 0.305852981869319 0.470849819277219 0.880987013717517 -0.911815715801043 0.392222533552221 0.376287354051199 1 1 FALSE FALSE TRUE TRUE Bacteroidales_[G-2] 0.359701801039228 -0.695809260441984 0.444727377883154 0.569181251755561 0.80881416105157 -1.22247396289997 0.428139286150949 0.235740020757306 1 1 FALSE FALSE TRUE TRUE Limosilactobacillus 0.647699252220184 -0.494229980275234 0.0803466400459622 0.259051798255445 8.06131098761153 -1.90784230645597 0.00128599275845259 0.129066471001574 0.108023391710018 1 FALSE FALSE FALSE TRUE Alloprevotella 0.0407644844040968 -0.0817227780608949 0.441455030627371 0.582676856606832 0.0923411934986099 -0.140254031259797 0.927162955401763 0.889583191676467 1 1 FALSE FALSE TRUE TRUE Mycoplasma -0.280248693359897 0.0898959138504165 0.296145216728811 0.448011727369997 -0.946321863494858 0.200655269401407 0.36124317097321 0.844073308574076 1 1 FALSE FALSE TRUE TRUE Rothia -0.432735888879175 0.628527781864013 0.370637777849556 0.45633835200036 -1.16754393302786 1.37732842113502 0.254006022945877 0.180618222737034 1 1 FALSE FALSE TRUE TRUE Pseudoramibacter 1.25288186808281 -1.48186680572838 0.0803466400459622 0.296404895955094 15.5934568933574 -4.99946804506524 2.85137425625102e-07 0.00105352567992327 2.62326431575093e-05 0.095870836873018 TRUE FALSE FALSE FALSE Streptobacillus -0.5799344735682 0.0178218981991859 0.0803466400459622 0.295411881886086 -7.21790572992783 0.0603289823191951 0.00195379920923381 0.954787538721941 0.156303936738704 1 FALSE FALSE FALSE TRUE Cloacibacterium -1.14635570695619 1.65119748703317 0.577581968390659 0.645061627776632 -1.98474981854148 2.55975152750046 0.0705147929512016 0.0250129495513027 1 1 FALSE FALSE TRUE FALSE Pseudostreptobacillus 0.614999780096711 -1.0252617006297 0.341337259299324 0.415741617920641 1.80173644494347 -2.46610311894589 0.121659500716122 0.048714467406605 1 1 FALSE FALSE TRUE FALSE Phocaeicola NA NA NA NA NA NA 1 1 1 1 FALSE FALSE TRUE TRUE Peptostreptococcus -1.84059267480191 2.44630701163674 0.324159962330333 0.441211863388361 -5.67803827952778 5.54451775808999 8.8218097963397e-06 1.22105078355597e-05 0.000802784691466913 0.00114778773654261 TRUE TRUE TRUE TRUE Catonella -0.221510848876247 0.306883832750721 0.390877072184247 0.47069098854764 -0.566702077557095 0.651985783066804 0.576178678819881 0.52060605850794 1 1 FALSE FALSE TRUE TRUE Megasphaera -0.188575865815657 0.262287747268735 0.537737154301477 0.658824407393097 -0.350684092232045 0.398114800127976 0.728763176155635 0.693925063227831 1 1 FALSE FALSE TRUE TRUE Lachnospiraceae_[G-2] 0.38402645195145 -0.688880924005228 0.405277340677383 0.504668134626129 0.947564577159891 -1.36501767545829 0.354128491006108 0.186694572535242 1 1 FALSE FALSE TRUE FALSE Riemerella -0.22149434305132 0.31166546312223 0.450743726952831 0.568464632142131 -0.491397505515364 0.548258318108179 0.627431921866257 0.588377362472511 1 1 FALSE FALSE TRUE TRUE Streptococcus -0.357626924612402 0.515864335463854 0.587069510884356 0.633190305756463 -0.609173050178804 0.814706622596754 0.54790624881035 0.42293368992369 1 1 FALSE FALSE TRUE TRUE Morococcus_Neisseria -0.0591623237117764 0.0681674341129145 0.45264125509374 0.537926486672272 -0.130704665219975 0.126722583479041 0.897055031713584 0.900173691265721 1 1 FALSE FALSE TRUE TRUE Kingella_Neisseria -0.703399968151242 1.02100731233662 0.470865110290305 0.548364479679264 -1.49384601402633 1.86191365446172 0.148247878270687 0.0749048760731827 1 1 FALSE FALSE TRUE TRUE Peptoanaerobacter_Peptostreptococcaceae_[G-7] -0.0527699072379054 -0.0863500913808612 0.433993452063916 0.569237863736568 -0.121591482514196 -0.151694215866185 0.904648267148982 0.881213779569328 1 1 FALSE FALSE TRUE TRUE Mogibacterium -0.992191547626183 1.46771126998452 0.277976202513948 0.443691696962598 -3.56933988828198 3.30795297733112 0.00148312619463012 0.00284865233885581 0.122885399523755 0.247832753480455 FALSE FALSE TRUE TRUE Escherichia_Pseudescherichia_Shigella NA NA NA NA NA NA 1 1 1 1 FALSE FALSE FALSE FALSE Actinomyces 0.195128430630656 -0.313268697400734 0.483818557056535 0.58213860238296 0.403309107897353 -0.538134210853535 0.690149519966751 0.595243445825359 1 1 FALSE FALSE TRUE TRUE Parvimonas_Peptostreptococcus -1.6582494360073 2.38520802284235 0.423555153337237 0.524168820102002 -3.91507321523956 4.55045766052662 0.00101475343850259 0.00024784710770783 0.0862540422727199 0.0230497810168282 FALSE TRUE FALSE FALSE Porphyromonas -0.471168377110408 0.686176514210862 0.440801099463241 0.551904022773325 -1.06889111139728 1.24328956828909 0.295331393719493 0.225294882566614 1 1 FALSE FALSE TRUE TRUE Aggregatibacter -0.213474100438186 0.299635099202528 0.403120097789938 0.509988805907682 -0.52955459578556 0.587532698230964 0.601092276715911 0.562115678867952 1 1 FALSE FALSE TRUE TRUE Moraxella 1.57414579754035 -2.05156102673113 0.0803466400459622 0.371064768204736 19.5919306226105 -5.52884887632116 4.00255048993651e-05 0.0052284329948815 0.00352224443114413 0.433959938575165 TRUE FALSE FALSE FALSE Fretibacterium -1.15941778127636 1.13140390399846 0.179701348927103 0.328642805888858 -6.45191473630331 3.44265531977319 2.15996872768695e-05 0.00436929355060634 0.00194397185491826 0.367020658250932 TRUE FALSE FALSE FALSE Schaalia -1.13698388274115 1.68489977265697 0.501900313294058 0.573474459577601 -2.26535798569028 2.93805546963331 0.0324092104709362 0.00700359555316998 1 0.574294835359939 FALSE FALSE TRUE TRUE Lachnoanaerobaculum -0.373491988483756 0.539661931270884 0.332236265958097 0.413622189883125 -1.12417585541628 1.30472190436247 0.271617194621936 0.203870789887115 1 1 FALSE FALSE TRUE TRUE Eikenella_Neisseria 0.185940393366061 -0.304630022859026 0.262034919989092 0.444390201734875 0.709601580483249 -0.685501214180166 0.48757082101474 0.502269311300551 1 1 FALSE FALSE TRUE TRUE Eikenella_Kingella 0.579456716006784 -0.950915034854227 0.314162342654045 0.434673646701824 1.84444994620148 -2.18765283349817 0.0837130918619407 0.0438837637024413 1 1 FALSE FALSE TRUE FALSE Tannerella -0.0157448347210314 -0.0170375233701654 0.399471723298574 0.520234301846521 -0.0394141407332187 -0.0327497116389526 0.968886245876535 0.974145027130239 1 1 FALSE FALSE TRUE TRUE Hallella_Prevotella -1.56673784449597 1.84611185639937 0.241966557107997 0.4344537541105 -6.47501813152093 4.24927127210373 3.04617422267548e-05 0.00112876171258277 0.00271109505818118 0.100459792419867 TRUE FALSE FALSE FALSE Selenomonas 0.321108738503093 -0.50223915920939 0.325681973302025 0.416090973033432 0.985957973809343 -1.20704170904721 0.333600547700827 0.238713211563837 1 1 FALSE FALSE TRUE TRUE Gemella -0.385456280665076 0.557608369542863 0.368409175315092 0.481692096482471 -1.04627220626469 1.15760331883119 0.305446474035709 0.257966489440518 1 1 FALSE FALSE TRUE TRUE Bifidobacterium -0.632548979564111 0.456927853756811 0.367916286302111 0.454294959599763 -1.71927420207949 1.00579556101474 0.160686484334537 0.371419991360641 1 1 FALSE FALSE TRUE TRUE Veillonella -0.139685639964037 0.188952408491306 0.317600485913792 0.439568575622884 -0.43981557384 0.429858772828684 0.663849494599547 0.67098091471104 1 1 FALSE FALSE TRUE TRUE Kocuria NA NA NA NA NA NA 1 1 1 1 FALSE FALSE FALSE FALSE Centipeda_Selenomonas 0.133552928905965 -0.380248873619175 0.44843432126524 0.496434835617575 0.29782048913908 -0.765959288787899 0.770933483885513 0.458502830550669 1 1 FALSE FALSE TRUE TRUE Neisseria -0.836057677424405 1.23351046468186 0.397946803875077 0.470010173724625 -2.10092823785276 2.62443354131427 0.0458956363524319 0.0145875782758738 1 1 FALSE FALSE TRUE TRUE Mesocricetibacter_Pasteurella_Rodentibacter 0.0154650261785626 -0.150295141526382 0.192933825386892 0.325317544499084 0.0801571530940747 -0.461995192290666 0.937171939379368 0.6507144788858 1 1 FALSE FALSE TRUE TRUE Peptococcus 0.593818530618434 -0.995585572607681 0.259992393127182 0.394956864719657 2.28398424844666 -2.52074507760323 0.0340506538055238 0.0208089526386931 1 1 FALSE FALSE FALSE FALSE