taxon lfc_(Intercept) lfc_Age_HIV_Shedding_AgeADULT HIV-Pos SHEDDER se_(Intercept) se_Age_HIV_Shedding_AgeADULT HIV-Pos SHEDDER W_(Intercept) W_Age_HIV_Shedding_AgeADULT HIV-Pos SHEDDER p_(Intercept) p_Age_HIV_Shedding_AgeADULT HIV-Pos SHEDDER q_(Intercept) q_Age_HIV_Shedding_AgeADULT HIV-Pos SHEDDER diff_(Intercept) diff_Age_HIV_Shedding_AgeADULT HIV-Pos SHEDDER passed_ss_(Intercept) passed_ss_Age_HIV_Shedding_AgeADULT HIV-Pos SHEDDER Lachnospiraceae_[G-3] -0.464817622366152 1.2943720704499 0.377430376994228 0.594059552509487 -1.23153209359527 2.1788591143465 0.237083130649536 0.0457001866825505 1 1 FALSE FALSE TRUE FALSE Butyrivibrio -0.352438371883393 0.837515703887394 0.28665385037064 0.454060517421106 -1.22949114909042 1.84450237744557 0.237825152693246 0.0849491193261135 1 1 FALSE FALSE FALSE FALSE Oribacterium -0.736500337029404 1.80574436804056 0.34100395210322 0.537902559273401 -2.15980000374444 3.3570101813231 0.0437779706076114 0.00331102414195909 1 0.288059100350441 FALSE FALSE FALSE TRUE Fusobacterium 0.0110963358958226 0.497450190421413 0.249707455938282 0.365636996848443 0.0444373431066679 1.36050288868226 0.965019505420959 0.189593639861412 1 1 FALSE FALSE TRUE TRUE Treponema -0.0494764821385888 0.603452621981632 0.503651057493222 0.66922437601674 -0.0982356363646763 0.901719428651739 0.922774151076492 0.378495002729996 1 1 FALSE FALSE TRUE TRUE Peptoniphilaceae_[G-1] NA NA NA NA NA NA 1 1 1 1 FALSE FALSE TRUE TRUE Peptostreptococcaceae_[G-9] -1.16270644401024 2.30197273974251 0.423430412361421 0.611362237193564 -2.74592095906849 3.7653171879075 0.0137853497870613 0.00154275194939169 1 0.137528307954891 FALSE FALSE TRUE TRUE Romboutsia -0.458569598187583 0.718992484021205 NA 0.362133246188615 NA 1.98543627680824 1 0.0725913814417161 1 1 FALSE FALSE FALSE FALSE Eikenella 0.449101966165856 -0.269059662551146 0.384935441047046 0.567424335134036 1.16669425123411 -0.474177164938809 0.25776921942557 0.640777387220546 1 1 FALSE FALSE TRUE TRUE Granulicatella 0.324600667157957 -0.0511823892873234 0.356393498481734 0.446869478091579 0.910792897571878 -0.114535433267685 0.373815323080904 0.910015073879333 1 1 FALSE FALSE TRUE TRUE Prevotella 0.120571691732119 0.305868317707893 0.407586171118747 0.536193411918905 0.295818897390883 0.570444005668151 0.770577193846775 0.575061379991869 1 1 FALSE FALSE TRUE TRUE Peptostreptococcaceae_[G-6] -0.430093092992578 1.23110978408403 0.333440490086525 0.428411695345315 -1.28986462586164 2.87366054069022 0.326122164602371 0.102766032203149 1 1 FALSE FALSE TRUE TRUE Ruminococcaceae_[G-1] 0.159152711928024 0.23835153236506 0.429880647592649 0.551186927767921 0.370225347010353 0.432433209782905 0.715309520347212 0.670294907053929 1 1 FALSE FALSE TRUE TRUE Centipeda -0.216019951870975 0.769126264228585 0.374407927917428 0.542590677972932 -0.576964149964838 1.41750733186565 0.572521691536115 0.176771876455734 1 1 FALSE FALSE TRUE TRUE Weeksellaceae_[G-1] 0.116104760973917 0.334214380725943 0.443823720125224 0.561408581008092 0.261601072022826 0.595313987053443 0.796966764921543 0.55996031152898 1 1 FALSE FALSE TRUE TRUE Bulleidia -0.440938130992646 0.772656469630412 0.164196220867782 0.401602784006637 -2.68543410233363 1.92393205525598 0.0362725698780216 0.102704665366461 1 1 FALSE FALSE FALSE TRUE Shuttleworthia -0.257160277732832 0.698637253813845 0.393179701224365 0.593929119443282 -0.654052782816694 1.17629735761855 0.522979608974677 0.257807352037523 1 1 FALSE FALSE TRUE FALSE Peptostreptococcaceae_[G-2] -1.54049343619276 1.98134436681929 0.127642237590619 0.404751577622311 -12.068837598519 4.89521097967938 1.09683571081394e-07 0.000475227975096991 1.05296228238138e-05 0.0446714296591172 TRUE TRUE TRUE TRUE Cardiobacterium 0.466020180357412 -0.262124874372516 0.483116832542027 0.593567593268324 0.964611764622944 -0.441609139961962 0.348261683394773 0.664337827317383 1 1 FALSE FALSE TRUE TRUE Filifactor -0.270698710388816 0.869961568842011 0.289730698633755 0.654107904202906 -0.934311454275691 1.32999702839877 0.368563531370566 0.20824537609382 1 1 FALSE FALSE TRUE TRUE Schaalia -1.07040713849493 2.39008127060523 0.755610030122238 0.856011244126094 -1.41661319440369 2.79211434079383 0.172783699577154 0.0116215262799443 1 0.976208207515324 FALSE FALSE TRUE TRUE Clostridioides NA NA NA NA NA NA 1 1 1 1 FALSE FALSE FALSE FALSE Veillonellaceae_[G-1] 0.065133164752979 0.245089797136355 0.314750000744927 0.602759142190019 0.206936186175779 0.406613156037525 0.839265781275346 0.690906871788758 1 1 FALSE FALSE FALSE FALSE Campylobacter -0.180399713344248 0.832568276591536 0.178050561479062 0.320572985058784 -1.01319373466543 2.59712550774941 0.323697220837788 0.0176934000764117 1 1 FALSE FALSE TRUE TRUE Erysipelotrichaceae_[G-1] 0.69222578412562 -0.766441895049131 0.486667464755528 0.626137359222289 1.42237941563107 -1.22407948313627 0.192713810513301 0.255745722047821 1 1 FALSE FALSE TRUE TRUE Stomatobaculum -0.486198761824847 1.36771661143258 0.516416542687528 0.656651171755339 -0.941485645085222 2.08286632273335 0.35827348665261 0.0510137427582559 1 1 FALSE FALSE TRUE FALSE Dialister -0.58913733762536 1.54785911908348 0.670238546183105 0.770620106216993 -0.878996502037069 2.00858906560587 0.390384646331533 0.0590084874882433 1 1 FALSE FALSE TRUE FALSE Lachnospiraceae_[G-8] 0.0212492221711812 0.286847887939239 0.303784282474047 0.560863114844551 0.0699483923201212 0.511440100707536 0.945613770367915 0.620145291446984 1 1 FALSE FALSE TRUE TRUE Lautropia 1.04275455818407 -1.30795169858302 0.541893443939458 0.924225161050134 1.92427970820878 -1.41518728736716 0.069428778288391 0.173195489319249 1 1 FALSE FALSE TRUE TRUE Peptidiphaga -0.490791846388825 1.41406986680216 0.566710101340528 0.695474303912101 -0.866036877105029 2.03324531021189 0.397866853380891 0.0570434637925922 1 1 FALSE FALSE TRUE TRUE Mitsuokella 0.226412827530039 0.104408638601425 0.316378232356557 0.410548463613752 0.715639713401244 0.254315014803352 0.490585985232551 0.804405235531283 1 1 FALSE FALSE TRUE TRUE Cryptobacterium 2.97566905151336 -3.10008393097878 NA 0.39466814964917 NA -7.8549128773997 1 2.56123881714452e-05 1 0.00245878926445873 FALSE TRUE FALSE FALSE Johnsonella -0.471767946387679 0.820254571473252 NA 0.297821333921017 NA 2.75418339134424 1 0.051154122618191 1 1 FALSE FALSE TRUE TRUE Bacteroidetes_[G-3] -0.230714238859929 0.381073083252897 0.16691732853448 0.377187504615766 -1.38220663417981 1.01030145110743 0.216161439026931 0.35134396117155 1 1 FALSE FALSE TRUE TRUE Lachnoanaerobaculum -0.232422904184089 0.923608860561259 0.256076716105702 0.413110439708611 -0.907629977917048 2.23574321000633 0.375442203612423 0.0375652870509273 1 1 FALSE FALSE TRUE TRUE Corynebacterium 0.677698141429 -0.669102969261647 0.451042916999965 0.598150244267404 1.50251365421409 -1.11862023910254 0.149403307814773 0.277246102082422 1 1 FALSE FALSE TRUE TRUE Scardovia 0.21440143164986 0.152555749648418 0.222488737240728 0.40253114016228 0.963650719172732 0.3789911746627 0.35280509721465 0.710812233711949 1 1 FALSE FALSE TRUE TRUE Haemophilus 0.485575568890398 -0.332888467319094 0.334197804160991 0.476857780804797 1.4529585857377 -0.698087523616109 0.162552121132472 0.493578349751025 1 1 FALSE FALSE TRUE TRUE Abiotrophia 0.477914163454385 -0.292308782510002 0.481375019389306 0.616077858866483 0.9928104787421 -0.474467274392589 0.334724353638641 0.641204260112334 1 1 FALSE FALSE TRUE TRUE Peptostreptococcaceae_[G-1] -0.845643895139877 1.73137793656539 0.467602529034957 0.658502180887559 -1.80846732562616 2.6292668222173 0.0882565089554676 0.0175813636128957 1 1 FALSE FALSE TRUE TRUE Capnocytophaga 0.432652765317056 -0.240273561065746 0.426750312459668 0.547862289416449 1.01383116235667 -0.438565613489607 0.323400743668791 0.66592248837405 1 1 FALSE FALSE TRUE TRUE Lancefieldella -0.922608451265215 2.00860046284795 0.408847181349286 0.538302133324432 -2.25660954349839 3.73136262797863 0.0367043895607282 0.0015280923106099 1 0.137528307954891 FALSE FALSE FALSE TRUE Kingella 0.976569171333388 -1.19212727159433 0.422492788792643 0.570186687357872 2.31144577431517 -2.09076658228974 0.0321879871817819 0.0502237072813909 1 1 FALSE FALSE TRUE FALSE Peptostreptococcaceae_[G-4] -0.764556252866466 0.869169901239877 0.160337668656952 0.354449167937164 -4.76841318244597 2.45217080434496 0.00502185628626954 0.057781953067899 0.467032634623067 1 FALSE FALSE FALSE TRUE Leptotrichia 0.297231306914405 -0.00328600886110644 0.268824457583001 0.386449128375739 1.10567062828587 -0.0085030826047342 0.282673468900316 0.993304250782429 1 1 FALSE FALSE TRUE TRUE Fannyhessea 4.42620208982794 -5.45102358292664 NA 0.390076447908634 NA -13.9742443107035 1 0.000793481665232689 1 0.0730003132014074 FALSE FALSE TRUE FALSE Bacteroidetes_[G-5] 0.518669916519894 -0.423079662695373 0.292592710471473 0.44320124377504 1.77266862077366 -0.954599448078533 0.0997012094468825 0.357194972379882 1 1 FALSE FALSE TRUE TRUE Peptostreptococcaceae_[G-5] -1.00721970638429 1.89469781078812 0.314235583206492 0.473479067444759 -3.20530124598404 4.00165063476469 0.0184761236472283 0.00710560675860729 1 0.60397657448162 FALSE FALSE FALSE FALSE Ruminococcaceae_[G-2] -0.53788346099355 1.36739214572851 0.458165800521373 0.616177056366429 -1.17399304003368 2.21915459460949 0.255697506147802 0.0395666824089304 1 1 FALSE FALSE TRUE TRUE Desulfobulbus 0.296853384827496 0.0843762754590803 0.145037037717084 0.447095759429698 2.04674191847845 0.18872081356063 0.074886023011206 0.855011265376719 1 1 FALSE FALSE TRUE TRUE Fretibacterium -0.65435316302862 1.17737331598667 0.241952583238105 0.545657886733009 -2.70446859575239 2.15771336695214 0.0180395869407559 0.0502432910931894 1 1 FALSE FALSE FALSE FALSE Pseudoleptotrichia -0.0743952069638671 0.647060390425869 0.403656472341272 0.59159058899844 -0.184303267905908 1.09376383339928 0.855728416584463 0.287732070849401 1 1 FALSE FALSE TRUE TRUE Parvimonas -0.882283619388151 1.75950439698882 0.383324392138645 0.666200233205549 -2.30166312784248 2.64110444471422 0.0342730446471049 0.0171547178372068 1 1 FALSE FALSE FALSE TRUE Solobacterium -0.673173985543035 1.56034747933216 0.457695463276617 0.622585150567584 -1.47079016410567 2.50623947247964 0.158613530808352 0.0220204564809652 1 1 FALSE FALSE TRUE TRUE Ottowia -0.109096685611117 0.324959583291525 0.183484558744194 0.450594511363036 -0.594582379889603 0.721179630680657 0.570832786577453 0.494175130394553 1 1 FALSE FALSE TRUE TRUE Anaeroglobus 0.228388809299414 -0.0206779190207112 0.824872229735653 0.900109277797831 0.276877801271848 -0.0229726762413792 0.786227434077614 0.98202094421818 1 1 FALSE FALSE TRUE TRUE Bacteroidales_[G-2] -0.637500677466147 1.32096497819073 0.273871974129118 0.553924213175684 -2.32773243590669 2.38473954878692 0.0333720692837963 0.0298102675842044 1 1 FALSE FALSE FALSE TRUE Actinomyces 0.247806943040704 0.0832066279178713 0.372341442580485 0.563212409104673 0.665536829108509 0.14773578595355 0.513706349330691 0.884107813688265 1 1 FALSE FALSE TRUE TRUE Limosilactobacillus -0.710330173915543 1.38778156483834 0.609505751987113 0.731824238919327 -1.16541996789976 1.89633178437442 0.273805908756101 0.09041676936741 1 1 FALSE FALSE TRUE TRUE Alloprevotella 0.457024471767124 -0.282924047353365 0.456125883954408 0.582942004390611 1.00197004345582 -0.485338241578809 0.328948877413796 0.632985583527842 1 1 FALSE FALSE TRUE TRUE Mycoplasma -0.357494162261428 1.09831319911612 0.284161948404545 0.431976022967644 -1.258064861494 2.54253278126593 0.2400265647275 0.0315792777964044 1 1 FALSE FALSE TRUE FALSE Rothia 0.0650355539138793 0.403056558889814 0.415372753993716 0.536740205319746 0.156571545168953 0.750934166837206 0.877234245681154 0.461892247290789 1 1 FALSE FALSE TRUE TRUE Pseudoramibacter -0.0844472602983604 0.264221260027099 0.290289954547808 0.514222802348974 -0.290906588310663 0.513826416915263 0.777066906420764 0.618535135637442 1 1 FALSE FALSE TRUE TRUE Streptobacillus -1.27620162070951 2.88833092816886 0.454639130116656 0.514430657952799 -2.8070650680289 5.61461663203182 0.106936202003233 0.0302881327115464 1 1 FALSE FALSE TRUE FALSE Cloacibacterium 0.432459595836291 -0.419830560185731 0.577296660728157 0.685013348538207 0.749111549148439 -0.612879385608521 0.475237464994944 0.556973178216515 1 1 FALSE FALSE FALSE FALSE Pseudostreptobacillus 0.445341513514786 0.248306635781074 0.342332287298427 0.476128961814388 1.30090420926777 0.521511304069491 0.284195678608564 0.63806396040065 1 1 FALSE FALSE TRUE TRUE Phocaeicola -1.87899778238565e-05 0.124317864319593 0.130332054941977 0.362850261160227 -0.000144170041915028 0.342614785289342 0.999888499172314 0.740716405832814 1 1 FALSE FALSE TRUE FALSE Peptostreptococcus -0.948191830029166 1.9115996656937 0.432498267184096 0.622792940702386 -2.19235983580383 3.06939841600934 0.0425591628044637 0.00694502648598612 1 0.597272277794806 FALSE FALSE TRUE TRUE Catonella -0.656804255894823 1.53306459658514 0.264795796783213 0.376057121171445 -2.48041798198385 4.07668013787249 0.0232336577021658 0.000708024017917914 1 0.065846233666366 FALSE FALSE FALSE TRUE Megasphaera -0.812265862130753 1.84289220889046 0.557336415353627 0.711560312890314 -1.45740676502427 2.58993113514825 0.162229886630448 0.0184863770808789 1 1 FALSE FALSE TRUE TRUE Lachnospiraceae_[G-2] -0.213863914491391 0.747229662365871 0.399351406526817 0.600222512618272 -0.535528136363356 1.2449210861924 0.599650293454365 0.231086913270245 1 1 FALSE FALSE TRUE TRUE Riemerella 0.503305605744088 -0.350068799947286 0.371183247921133 0.524187707164991 1.35594913984649 -0.667830998633282 0.191883554302309 0.512714072023957 1 1 FALSE FALSE TRUE TRUE Absconditabacteria_(SR1)_[G-1] 0.247831701128235 0.00951854220011156 0.464383285008829 0.698124658416153 0.533679202350107 0.0136344449166234 0.600899753169691 0.989290189836602 1 1 FALSE FALSE TRUE TRUE Streptococcus 0.289372742805056 0.0104664783302543 0.285958676433369 0.383131163869525 1.01193902005097 0.0273182641279962 0.324281366254368 0.978490786412912 1 1 FALSE FALSE TRUE TRUE Morococcus_Neisseria 0.717680425617746 -0.739071966591953 0.484498447788813 0.716784331366515 1.48128529388101 -1.03109392079337 0.15492481284258 0.315444252352263 1 1 FALSE FALSE TRUE TRUE Kingella_Neisseria 0.578702823185301 -0.495861162335173 0.52309792318158 0.805637977903723 1.10629921767902 -0.615488812512797 0.28240823317971 0.545534646194169 1 1 FALSE FALSE TRUE TRUE Peptoanaerobacter_Peptostreptococcaceae_[G-7] -0.201618693080694 0.705343667863808 0.425867965890621 0.654431855048249 -0.473430051633603 1.0777954380167 0.642301356825956 0.297107112019284 1 1 FALSE FALSE TRUE TRUE Mogibacterium -0.975457285314624 1.93691580434207 0.268031429808306 0.489000892853122 -3.63933918500626 3.96096578278407 0.00202810678724371 0.00100905999909965 0.190642038000909 0.0918244599180682 FALSE FALSE TRUE TRUE Escherichia_Pseudescherichia_Shigella 0.704940172059483 -2.10733149119522 0.221210058969404 0.316017887499469 3.18674555462681 -6.66839307062565 0.0128662192104537 0.000157773301183797 1 0.0149884636124607 FALSE TRUE TRUE TRUE Parvimonas_Peptostreptococcus -0.473688954461539 1.05829902629036 0.363936372632069 0.592642938418035 -1.30157079666348 1.78572789395807 0.215656631453875 0.0974779411705794 1 1 FALSE FALSE TRUE TRUE Porphyromonas 0.49207642747675 -0.34426496984521 0.550499269326945 0.652111336041673 0.893872989292747 -0.527923608773471 0.382573129460237 0.603663986312071 1 1 FALSE FALSE TRUE TRUE Aggregatibacter 0.566206575900472 -0.473992729586724 0.365938612352947 0.647278893748538 1.54727201991564 -0.732285162029192 0.138292773348451 0.472931844935206 1 1 FALSE FALSE TRUE TRUE Eikenella_Neisseria 0.560356206000482 -0.616358412423227 0.344751520334043 0.523752002653558 1.62539154419836 -1.17681347145306 0.128064546833261 0.26036849398049 1 1 FALSE FALSE TRUE TRUE Eikenella_Kingella 0.510153300577778 -0.529173689093535 0.428704366733673 0.510701385424579 1.1899885799267 -1.0361704592863 0.261535328672516 0.324529194124703 1 1 FALSE FALSE TRUE TRUE Tannerella -0.135825849327225 0.754564014561745 0.348882768107845 0.50889646798887 -0.389316589248222 1.48274563103914 0.701371066007015 0.1545396870564 1 1 FALSE FALSE TRUE TRUE Hallella_Prevotella -0.0793935099165235 0.334728705351379 0.236512621170761 0.50616925621654 -0.335684030406147 0.6612979773868 0.744045588130481 0.523364878164699 1 1 FALSE FALSE TRUE TRUE Lactobacillus 1.90142628760947 -2.300617404333 NA 0.331531616036568 NA -6.9393605105802 1 0.0201411338439844 1 1 FALSE FALSE TRUE FALSE Selenomonas -0.0387461537014098 0.58467454721657 0.276713088442697 0.483606375787408 -0.140022844309489 1.20898850075043 0.890115648665949 0.241497767623974 1 1 FALSE FALSE TRUE TRUE Gemella 0.420379802213698 -0.218795875634869 0.459777206476394 0.543030633718676 0.914311967388233 -0.402916266687486 0.372010800314951 0.691507456825483 1 1 FALSE FALSE TRUE TRUE Bifidobacterium 2.17786887454656 -2.80662389585907 0.380919743480472 0.620072802285647 5.71739562419979 -4.52628124554663 0.000722258003981867 0.00271172513935776 0.0686145103782773 0.238631812263483 FALSE FALSE FALSE FALSE Veillonella -0.161560663614099 0.799599939563776 0.34258736972265 0.453933875381122 -0.471589667023903 1.76148990619489 0.642589948807508 0.0942396505364346 1 1 FALSE FALSE TRUE FALSE Kocuria NA NA NA NA NA NA 1 1 1 1 FALSE FALSE FALSE FALSE Centipeda_Selenomonas -0.135836342019157 0.619361764818575 0.306258312171231 0.510073100420551 -0.443535200909779 1.21426078793004 0.6641562006491 0.244733837468873 1 1 FALSE FALSE TRUE TRUE Neisseria 0.227767483452942 0.118275682196455 0.395874218879247 0.551994018907706 0.575353161662739 0.214269861891802 0.571804109180472 0.832619428219412 1 1 FALSE FALSE TRUE TRUE Mesocricetibacter_Pasteurella_Rodentibacter 0.53499186837315 -0.52621648956705 0.371050742375851 0.540740350993388 1.44182939763866 -0.973140784852366 0.173005362150375 0.348243554526715 1 1 FALSE FALSE TRUE TRUE Peptococcus -0.0147400376890127 0.397460506326701 0.357921237857651 0.550300506078273 -0.0411823499975573 0.722260841007053 0.967660051749465 0.480558212487784 1 1 FALSE FALSE TRUE TRUE