Wed, 14 Mar 2012 11:59:41 -0400 http://192.168.1.124/mtd/ PostNuke Powered Site en-us http://192.168.1.124/mtd/images/mtd_logo.jpg http://192.168.1.124/mtd/ tchen@forsyth.org http://192.168.1.124/mtd/index.php?name=News&file=article&sid=91 Wed, 14 Mar 2012 11:59:41 -0400 http://192.168.1.124/mtd/index.php?name=News&file=article&sid=88 We are actively working on a new home page design and interface for BROP. The new design will have easier accesses to all the tools and databases available at BROP. During the transition stage, you may encounter some problems with some links. We apologize for the inconvenience this may cause. We look forward to complete this redesign pretty soon. Please check here often for any update. You are also welcome to subscribe to the BROP MAILING LIST to receive updates in your email. Fri, 01 Jun 2007 10:05:30 -0400 http://192.168.1.124/mtd/index.php?name=News&file=article&sid=84 MyOPMD and SAOPMD are two new microarray data analysis and management tools specially designed for oral pathogen microarrays and are available now for use ... Thu, 02 Mar 2006 10:20:23 -0500 http://192.168.1.124/mtd/index.php?name=News&file=article&sid=83 BROP is now providing the complete EMBOSS Software Package for analyzing the oral pathogen sequences. EMBOSS stands for "The European Molecular Biology Open Software Suite". It is a free Open Source software analysis package and contains more than 150 applications for analyzing the molecular sequences. [Quick visual demo]. Wed, 18 Jan 2006 13:06:05 -0500 http://192.168.1.124/mtd/index.php?name=News&file=article&sid=82 Now you can retrieve a specified range of any BROP geonomes (both oral pathogens and NCBI microbial genomes) while you view them in the Genome Viewer. Click here for an illustrated example. Wed, 09 Nov 2005 21:42:55 -0500 http://192.168.1.124/mtd/index.php?name=News&file=article&sid=80 The introductory article for BROP has been published in and available for download at the Nucleic Acids Reserach journal web site. [Download BROP article] Thu, 14 Jul 2005 15:55:09 -0400 http://192.168.1.124/mtd/index.php?name=News&file=article&sid=16 Below is a list of all the finished or ongoing oral pathogen genome sequencing projects and the available tools, databases and resource, including those provided here at BROP. You can help to make this list more complete and up-to-date by reporting any new or missing links, as well as updated info here (†: incomplete, pseudomolecule; * : data not yet publicly accessible). Organism (click on name for project home) Strain Genome Size (mbp) Investigating Institution Funding Source Status (No. of contig) Databases & Tools Aggregatibacter actinomycetemcomitans (Actinobacillus actinomycetemcomitans) HK1651 2.90 University of Oklahoma NIDCR 1 OU OU NCBI BROP LANL LANL BROP Actinomyces naeslundii  MG1 3 TIGR NIDCR 1 TIGR TIGR TIGR BROP Tannerella forsythensis (Bacteroides forsythus)  FDC 92A2 3.40 TIGR NIDCR 1 TIGR  BROP BROP Candida albicans  SC5314 NA Stanford Genome Technology Center NIDCR/ Burroughs Wellcome Fund NA Stanford Stanford CGD Candida albicans 1161 15 Sanger Centre Beowulf Genomics NA Sanger Sanger CGD Fusobacterium nucleatum  ATCC 10953 2.4 Baylor College of Medicine NIDCR 101 BCM BCM  BROP* BROP* Fusobacterium nucleatum  ATCC 25586 2.17 Integrated Genomics NIH 1 IG NCBI NCBI LANL BROP LANL BROP Fusobacterium nucleatum vincentii ATCC 49256 NA Integrated Genomics NIH 302 IG Porphyromonas gingivalis   W83 2.34 The Forsyth Institute / TIGR NIDCR 1 TIGR NCBI TIGR  NCBI  BROP  LANL  TIGR  LANL BROP OPMD SAOPMD MyOPMD Prevotella intermedia 17 3.8 TIGR NIDCR 1 TIGR TIGR BROP TIGR BROP Streptococcus gordonii  NCTC 7868 NA TIGR NIDCR 273 TIGR TIGR  BROP* BROP* Streptococcus mitis  NCTC 12261 2.2 TIGR NIDCR 1† TIGR TIGR BROP* TIGR BROP* Streptococcus mutans  UA159 (ATCC700610) 2.03 University of Oklahoma NIDCR 1 OU NCBI OU NCBI BROP LANL NCBI BROP LANL SAOPMD MyOPMD Streptococcus sanguis  SK36 2.4 Virginia Commonwealth University NIDCR 1 VCU NCBI VCU NCBI VCU BROP Streptococcus sobrinus  6715 NA TIGR NIDCR NA TIGR Treponema denticola  ATCC 35405 2.8 Baylor College of Medicine / TIGR NIDCR 1 BCM NCBI TIGR BCM NCBI BROP LANL TIGR BROP LANL NCBI Treponema lecithinolyticum   OMZ 684T 2.3 The Forsyth Institue NIDCR 1001 BROP* BROP* BROP*   Sat, 21 Aug 2004 17:31:19 -0400