MTD: Microbial Transcriptome Database ::

Structural RNA Classification

We classified four different categories of RNA architecture which inlcude antisense RNAs, nonannotated RNAs, 5' and 3' untranslated (UTR) regions, and operons. The list of classification were constructed upon the basis of the identified transcription units by our HM-SVMs algorithm.

For Porphyromonas gingivalis W83, three growth conditions are available for checking the classification results. Please provide the proper criteria below to access the results.

Growth Condition:
Genome direction:
Structural RNA category:
Search genomic range:	to * *Whole genome will be considered if the box is empty

Total 249 RNAs returned

SegID *	Direction *	Start Position *	Stop Position *	Expression Log Ave *	RNA Size *	5` UTR distance *	3` UTR distance *	Profile Viewer
359	F	1043933	1044111	9.46	179	50	53	Link
193	F	548138	548329	6.51	192	0	79	Link
749	F	2284886	2285099	8.78	214	64	75	Link
327	F	956954	957183	9.21	230	82	71	Link
299	F	880994	881279	6.22	286	0	7	Link
283	F	827234	827534	8.76	301	66	157	Link
457	F	1327972	1328275	5.79	304	0	3	Link
761	F	2335116	2335431	6.07	316	0	3	Link
649	F	1964557	1964905	6.52	349	114	109	Link
515	F	1480782	1481171	6.15	390	52	164	Link
253	F	740254	740714	5.66	461	2	0	Link
15	F	35353	35819	7.52	467	298	95	Link
531	F	1534860	1535366	6.94	507	0	122	Link
17	F	35960	36517	5.90	558	26	55	Link
439	F	1284039	1284613	5.71	575	54	50	Link
197	F	582468	583055	10.84	588	88	86	Link
705	F	2135830	2136421	6.42	592	162	0	Link
533	F	1539236	1539833	5.86	598	0	91	Link
297	F	876173	876772	5.56	600	197	265	Link
465	F	1353072	1353673	6.29	602	13	82	Link
35	F	105609	106251	9.52	643	55	108	Link
767	F	2342226	2342929	5.43	704	0	125	Link
691	F	2094399	2095112	5.52	714	328	26	Link
415	F	1194949	1195669	7.38	721	34	126	Link
561	F	1628334	1629074	6.68	741	244	0	Link
639	F	1920189	1920934	8.01	746	0	139	Link
165	F	495438	496186	6.22	749	18	0	Link
463	F	1351915	1352665	8.53	751	68	116	Link
155	F	462222	462985	7.47	764	169	0	Link
21	F	46565	47329	8.67	765	94	305	Link
233	F	662362	663143	10.99	782	330	0	Link
169	F	499680	500484	5.87	805	0	316	Link
261	F	773899	774719	8.18	821	88	124	Link
637	F	1917366	1918188	10.01	823	91	78	Link
385	F	1119780	1120602	6.47	823	50	0	Link
485	F	1398830	1399660	9.43	831	62	133	Link
85	F	236988	237834	6.01	847	34	273	Link
401	F	1173734	1174597	6.12	864	11	0	Link
505	F	1444013	1444886	6.67	874	0	667	Link
3	F	3050	3928	7.50	879	58	116	Link
741	F	2259864	2260787	8.45	924	26	57	Link
423	F	1215933	1216873	6.31	941	67	259	Link
555	F	1609893	1610920	6.20	1028	0	520	Link
765	F	2338893	2339953	6.15	1061	110	0	Link
349	F	1029937	1031003	6.18	1067	0	100	Link
595	F	1758719	1759790	6.20	1072	0	105	Link
459	F	1338702	1339778	6.20	1077	0	110	Link
681	F	2063391	2064511	6.47	1121	0	101	Link
645	F	1937374	1938516	5.76	1143	76	0	Link
677	F	2057509	2058671	6.07	1163	0	476	Link
613	F	1820169	1821359	5.83	1191	142	122	Link
139	F	413318	414527	5.39	1210	13	0	Link
489	F	1404132	1405343	6.90	1212	41	112	Link
729	F	2226604	2227823	6.16	1220	83	165	Link
149	F	441238	442488	6.62	1251	351	78	Link
333	F	970619	971871	8.45	1253	137	663	Link
535	F	1548617	1549875	6.84	1259	54	55	Link
187	F	537359	538619	5.63	1261	0	32	Link
395	F	1153293	1154557	7.13	1265	50	0	Link
521	F	1491798	1493077	6.64	1280	203	111	Link
659	F	1992198	1993489	6.55	1292	219	494	Link
731	F	2230143	2231435	10.09	1293	0	111	Link
629	F	1876177	1877483	8.82	1307	0	96	Link
347	F	1026914	1028222	7.21	1309	54	114	Link
529	F	1532317	1533632	9.93	1316	107	123	Link
71	F	216453	217772	9.95	1320	89	145	Link
525	F	1518929	1520250	7.03	1322	42	115	Link
663	F	2005439	2006788	9.88	1350	108	156	Link
109	F	336724	338087	5.68	1364	0	85	Link
417	F	1203338	1204715	6.68	1378	25	0	Link
719	F	2190343	2191741	5.34	1399	27	71	Link
671	F	2039706	2041109	6.73	1404	34	209	Link
609	F	1813051	1814485	7.59	1435	57	0	Link
687	F	2081510	2082962	6.34	1453	40	0	Link
513	F	1471765	1473241	6.12	1477	45	220	Link
597	F	1762392	1763878	6.97	1487	90	140	Link
321	F	929065	930565	7.32	1501	58	297	Link
9	F	17046	18553	6.36	1508	41	0	Link
173	F	501925	503437	9.29	1513	152	275	Link
221	F	626398	627917	7.15	1520	141	365	Link
679	F	2059831	2061372	6.55	1542	311	109	Link
603	F	1795015	1796571	7.12	1557	39	136	Link
123	F	383879	385443	5.83	1565	0	92	Link
227	F	648157	649739	7.15	1583	18	177	Link
315	F	914448	916055	7.83	1608	76	227	Link
449	F	1311634	1313255	6.49	1622	28	287	Link
279	F	812821	814453	7.55	1633	78	178	Link
703	F	2129835	2131535	8.19	1701	52	604	Link
371	F	1071840	1073543	7.28	1704	34	173	Link
709	F	2149729	2151436	6.46	1708	47	109	Link
125	F	387371	389082	5.45	1712	0	175	Link
627	F	1873835	1875565	8.29	1731	392	183	Link
507	F	1459058	1460819	6.28	1762	19	0	Link
217	F	619192	620991	5.75	1800	170	0	Link
41	F	125421	127225	6.62	1805	60	0	Link
105	F	308882	310711	7.16	1830	114	174	Link
623	F	1858142	1859979	6.94	1838	36	0	Link
201	F	586904	588815	9.39	1912	0	361	Link
553	F	1605900	1607847	6.19	1948	23	0	Link
341	F	1002167	1004125	6.98	1959	36	535	Link
483	F	1392368	1394339	8.51	1972	54	112	Link
721	F	2213696	2215674	9.18	1979	87	157	Link
487	F	1401522	1403522	8.05	2001	48	618	Link
249	F	727645	729653	7.63	2009	148	122	Link
495	F	1418008	1420040	5.66	2033	0	356	Link
95	F	265450	267521	7.15	2072	62	52	Link
137	F	409198	411299	6.01	2102	44	21	Link
49	F	144448	146567	7.37	2120	160	922	Link
1	F	-6	2171	9.04	2178	7	164	Link
755	F	2302716	2304897	8.42	2182	29	1355	Link
59	F	178956	181160	5.93	2205	12	105	Link
25	F	54143	56413	6.83	2271	56	160	Link
361	F	1044431	1046759	7.25	2329	19	57	Link
113	F	347776	350128	8.00	2353	0	280	Link
655	F	1987693	1990067	6.64	2375	12	116	Link
363	F	1046994	1049435	8.01	2442	76	517	Link
617	F	1845240	1847686	7.37	2447	85	0	Link
581	F	1712399	1714866	7.24	2468	9	187	Link
545	F	1574094	1576598	7.85	2505	131	0	Link
477	F	1375873	1378399	8.59	2527	98	629	Link
275	F	801052	803623	5.73	2572	31	174	Link
101	F	295687	298261	7.70	2575	116	79	Link
391	F	1126534	1129109	7.86	2576	264	602	Link
661	F	1993699	1996278	7.33	2580	0	263	Link
751	F	2298252	2300865	8.58	2614	129	1471	Link
653	F	1984644	1987285	6.59	2642	61	135	Link
743	F	2263029	2265673	6.81	2645	54	0	Link
63	F	197853	200497	6.71	2645	1374	113	Link
437	F	1274046	1276735	6.68	2690	73	1316	Link
667	F	2007517	2010221	7.73	2705	418	1441	Link
199	F	583298	586030	7.28	2733	84	165	Link
175	F	512360	515099	7.41	2740	68	625	Link
121	F	380726	383474	6.99	2749	73	0	Link
131	F	401076	403833	6.11	2758	309	22	Link
263	F	775209	778067	6.89	2859	0	41	Link
411	F	1187126	1190057	8.91	2932	51	96	Link
481	F	1389100	1392047	5.75	2948	124	434	Link
377	F	1091410	1094371	7.66	2962	130	1491	Link
641	F	1926242	1929317	7.52	3076	53	0	Link
135	F	405897	408985	8.64	3089	177	117	Link
159	F	466164	469264	8.25	3101	76	30	Link
633	F	1890146	1893254	6.30	3109	7	216	Link
619	F	1847954	1851083	8.88	3130	63	121	Link
231	F	658674	661813	6.87	3140	0	542	Link
51	F	148660	151979	5.68	3320	30	130	Link
389	F	1123058	1126389	7.49	3332	62	197	Link
117	F	365476	368845	6.93	3370	283	0	Link
239	F	683502	686952	7.78	3451	30	124	Link
469	F	1366030	1369536	7.45	3507	73	124	Link
707	F	2142259	2145768	6.89	3510	99	0	Link
91	F	251013	254531	7.51	3519	90	137	Link
611	F	1814921	1818457	7.07	3537	0	221	Link
53	F	158088	161784	7.63	3697	76	90	Link
337	F	988684	992388	8.35	3705	0	92	Link
689	F	2083487	2087234	6.45	3748	0	102	Link
547	F	1579660	1583423	8.28	3764	705	162	Link
435	F	1270010	1273800	8.15	3791	122	595	Link
399	F	1162040	1165836	5.86	3797	0	268	Link
79	F	232103	235945	8.44	3843	83	77	Link
453	F	1321898	1325807	7.18	3910	41	52	Link
675	F	2052429	2056341	5.86	3913	49	1885	Link
695	F	2098427	2102386	7.30	3960	27	1374	Link
375	F	1087253	1091244	7.86	3992	28	0	Link
429	F	1249286	1253317	7.61	4032	17	128	Link
501	F	1428206	1432275	6.83	4070	50	139	Link
115	F	353028	357121	7.56	4094	61	95	Link
713	F	2156471	2160614	8.26	4144	1242	139	Link
569	F	1668022	1672199	6.68	4178	35	0	Link
541	F	1565814	1570008	8.91	4195	67	0	Link
587	F	1737532	1741765	7.05	4234	67	134	Link
549	F	1583604	1587873	8.87	4270	156	0	Link
205	F	596000	600371	5.80	4372	0	83	Link
97	F	271730	276124	6.55	4395	39	538	Link
701	F	2124999	2129411	6.63	4413	73	149	Link
445	F	1294717	1299191	7.65	4475	44	197	Link
397	F	1157049	1161528	6.86	4480	108	0	Link
421	F	1210974	1215493	7.25	4520	78	62	Link
573	F	1682237	1686780	7.61	4544	68	118	Link
717	F	2185612	2190156	7.60	4545	60	192	Link
259	F	756584	761149	7.21	4566	67	207	Link
383	F	1114896	1119505	7.20	4610	131	0	Link
493	F	1409630	1414250	8.21	4621	176	80	Link
265	F	783275	787943	6.38	4669	39	0	Link
61	F	189757	194520	6.46	4764	35	105	Link
673	F	2041236	2046030	6.85	4795	46	358	Link
369	F	1055688	1060514	6.77	4827	44	150	Link
357	F	1037403	1042331	6.67	4929	21	0	Link
419	F	1205510	1210501	6.69	4992	28	311	Link
73	F	218282	223430	11.68	5149	187	373	Link
373	F	1073846	1079101	7.97	5256	57	0	Link
571	F	1674655	1679928	7.14	5274	28	0	Link
119	F	371588	376871	6.84	5284	82	375	Link
451	F	1315702	1320995	7.69	5294	51	236	Link
287	F	844365	849733	7.88	5369	63	70	Link
599	F	1766484	1772065	7.54	5582	68	522	Link
11	F	18922	24520	5.81	5599	0	294	Link
447	F	1299942	1305586	6.83	5645	1583	1478	Link
579	F	1706050	1711735	8.15	5686	1526	1189	Link
111	F	338272	343963	8.74	5692	87	76	Link
207	F	600822	606574	8.46	5753	31	755	Link
651	F	1973038	1978796	7.39	5759	30	690	Link
441	F	1287549	1293373	7.90	5825	36	0	Link
23	F	48030	53929	7.51	5900	44	390	Link
601	F	1779926	1785925	6.93	6000	187	791	Link
607	F	1806776	1812829	6.74	6054	113	297	Link
427	F	1231808	1237932	7.80	6125	0	605	Link
203	F	589130	595307	8.33	6178	152	111	Link
39	F	118886	125081	12.09	6196	452	129	Link
191	F	541559	547804	8.21	6246	0	119	Link
183	F	528273	534603	7.38	6331	36	141	Link
247	F	717141	723612	7.82	6472	450	0	Link
31	F	93914	100501	6.40	6588	31	0	Link
75	F	224064	230891	8.25	6828	10	111	Link
591	F	1744642	1751620	7.72	6979	0	568	Link
13	F	27845	34835	7.98	6991	27	344	Link
615	F	1835434	1842432	6.27	6999	29	88	Link
103	F	299185	306227	7.16	7043	55	0	Link
151	F	442658	449701	7.13	7044	99	283	Link
643	F	1930144	1937217	11.36	7074	333	423	Link
757	F	2310545	2317620	6.77	7076	0	415	Link
235	F	663994	671173	7.76	7180	158	95	Link
631	F	1881506	1888993	6.92	7488	256	95	Link
7	F	8841	16333	7.55	7493	74	0	Link
307	F	895595	903143	6.79	7549	22	600	Link
669	F	2030472	2038091	6.91	7620	84	91	Link
107	F	320074	327803	7.90	7730	0	1121	Link
635	F	1895036	1902946	7.35	7911	50	261	Link
625	F	1864886	1872973	7.26	8088	98	0	Link
739	F	2245584	2253724	7.15	8141	204	0	Link
237	F	672926	681275	7.87	8350	177	869	Link
229	F	649918	658587	8.19	8670	110	795	Link
127	F	389798	398629	7.66	8832	0	192	Link
99	F	284624	293905	7.64	9282	123	144	Link
43	F	128721	138145	6.21	9425	137	87	Link
317	F	917084	926735	6.89	9652	0	457	Link
523	F	1497101	1506839	7.60	9739	48	315	Link
381	F	1095481	1105256	7.61	9776	57	75	Link
715	F	2160918	2170920	6.53	10003	0	103	Link
345	F	1007951	1018331	6.96	10381	80	140	Link
195	F	569041	579451	7.18	10411	98	355	Link
585	F	1726344	1737395	6.98	11052	69	0	Link
325	F	942670	953843	7.04	11174	9	680	Link
559	F	1616340	1627596	6.78	11257	162	2760	Link
467	F	1353748	1365146	7.72	11399	146	145	Link
567	F	1653122	1665936	7.22	12815	34	97	Link
163	F	482196	495286	7.47	13091	0	120	Link
145	F	418843	434268	9.02	15426	76	0	Link
223	F	628154	643921	7.43	15768	69	60	Link
393	F	1131320	1148481	8.04	17162	0	130	Link